Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr680g00001 GATCAAGGCGGGAGCGACGATCACGATCACGTGAATGAGAATTTGAGTTTGATTGGCTTTGCTTTGAATTTTCGGATCTGGGGGTGTTGTTTATTGGGAATGAGGATGAAGTCGAGGTCGCTGGATGAGTGGAGGAGTTACTTTGGGTCGGCGAATTCGGACATATTTGAGATAATTGACCATGCTATACTTGTGGCGGCTTTGGATTGTCCTAAGGAGTTTAGAGGGAGGAGGGATGGGATAGCAGAGAGGTTGTTCTCCAGCAGGTTGACTCGGTGTGTGGAGTGTGACCGTGTTGAGTTGGCTCTGGCTGGGGATGCTAAAGAAGATGAAGGGGGTTTTGACACAGATGTGGCATGCAAAGACACCAAGGTCAATGGACTTGGAGAGGTTGGTGTCAACCTTGCTAGCAATTATAGCTTTCGGGAGGCTGAGGCATTGACTGATGAGATTGAAGAGGAGTCTCAGTATGTTGGAGAGGTTTTGAGGATCAGAGACATTCTTCTTAACCCTCAAGATCAGTCTGAGTCTGTCTTGTTTGATTCATTGAGGAGGCTTCAGCTCATGGAACTCAGTGTGGATTGCCTCAAGGCAACTGAGATTGGCAAGGTTGTCAACCGCTTCCGGAAGCGTGGATCAAAGGGTATTTGCCAACTCGCCCGGACTCTCATAAGTGGCTGGAAAGAAATGGTTGATGAATGGGTGAAAGTCACTGCTACCACCGCTATTGCAGACTCAGAAGGAGGCACACCAGATTCAGTAAATCCATCTGTTGTTGATGATGATGAAGAAGAAGAAGAAGGACTTCCATCGCCTCCTATGGATGATGCCTTCTTTGCAACTCAACCTGTTTCAATGGAACTCTCGCAGTTCTCTCTTTTGGATGTCGCATCTCTGGATAATGTAAAGTTCTTTGATGGCATGGATGATGATGGAAATCCTCGACCAAGTGGGCAATTCAACAGGAACCGTGAAAACGGCAGAAAGCCAGCTTTGGACAGTCAAGTTATAGAAAGGAGGAAGTTGCAGGCTTCCCCCGAGACAGCCATCATTACCAGGGAGGTTAAGAGTCAGAAGGCAAAGAAAAATGAGGCTCCTGTGAAGCTAAACAAACCAGTAACCGCTGATTCTGGCCCTGGCCAACCGTCAAAATCAAATATGAAGAGAAAAAGTAATATGGAGCCAAAGATGCAGCAAAAAATTGACAACAATTCAATTGCAAGGAGGCCTCCAATTGGTCAGCTAAATAAACACACGCTTTCAGATGATGCGGCAGTCCAAGTGAAGCTCGAAGCCACTAAGAGGAAACTTCAGGAGAGCTATCAACAAGCTGAAAATGCTAAGAGGCAGAGAACAATACAAGTTATGGAAATCAATGAACTTCCCAAGCAAGCTGTCCGCCGAAATGCACATTTCAAACCTGGATATCACAATAGGAACTGGGCTAATAATGCTCGAAGATAG 1464 0.4611 DQGGSDDHDHVNENLSLIGFALNFRIWGCCLLGMRMKSRSLDEWRSYFGSANSDIFEIIDHAILVAALDCPKEFRGRRDGIAERLFSSRLTRCVECDRVELALAGDAKEDEGGFDTDVACKDTKVNGLGEVGVNLASNYSFREAEALTDEIEEESQYVGEVLRIRDILLNPQDQSESVLFDSLRRLQLMELSVDCLKATEIGKVVNRFRKRGSKGICQLARTLISGWKEMVDEWVKVTATTAIADSEGGTPDSVNPSVVDDDEEEEEGLPSPPMDDAFFATQPVSMELSQFSLLDVASLDNVKFFDGMDDDGNPRPSGQFNRNRENGRKPALDSQVIERRKLQASPETAIITREVKSQKAKKNEAPVKLNKPVTADSGPGQPSKSNMKRKSNMEPKMQQKIDNNSIARRPPIGQLNKHTLSDDAAVQVKLEATKRKLQESYQQAENAKRQRTIQVMEINELPKQAVRRNAHFKPGYHNRNWANNARR 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr680g00001 487 MobiDBLite consensus disorder prediction 243 277 - -
Mupr680g00001 487 ProSiteProfiles TFIIS N-terminal domain profile. 159 234 IPR017923 -
Mupr680g00001 487 SMART TFS2_5 158 233 IPR003617 GO:0005634
Mupr680g00001 487 MobiDBLite consensus disorder prediction 307 396 - -
Mupr680g00001 487 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 38 474 IPR044805 -
Mupr680g00001 487 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 157 237 IPR035441 -
Mupr680g00001 487 CDD TFIIS_I 160 232 - -
Mupr680g00001 487 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 150 243 IPR035441 -
Mupr680g00001 487 Coils Coil 427 454 - -
Mupr680g00001 487 Pfam TFIIS helical bundle-like domain 183 231 IPR017923 -
Mupr680g00001 487 MobiDBLite consensus disorder prediction 257 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr680g00001 Mupr-Chr680 5178 8198 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Mupr680g00001 Med26 1.4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr680g00001 - - gmx:100799367 614.379