Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr6798g00001 ATGTCGTTAAGAAGCATAGTCCGTGAGCTCAAGGAGATGAGAGATGGAATAGGCAGCACATCGAAGCGGGGTGCAGAAATCAAGTGTCGGCTCAGTCGGACAAAGTCACATGTAGCTCCAGATATTCTTGCAACTCCATTTGATCCTATTCAACAGGGACAATGGGCAAATCTACCATCAGAATTGCTTTTGGACATAATCCGGAGGGTTGAAGAGAGTGAGACATCTTGGCCTGCCCGTGCTGTCGTCGTCTTTTGTGCTTCAGTATGTAAATCATGGAGGTCCATTACAAAGGAGATTGTCAAGACTCCTGAACAATGTGGAAGGATCACATTTCCTATTTCATTGAAGCAGCCGGGTCCACGTGATTCTCCAATACAATGCTTCATCAGGAGGAACAAAGAAACTTCTACATATCTATTGTACTTTGGTCTGGTTCCATCAGAGAATGACAGTAATAAGTTGTTATTAGCTGCCAAAAGGATAAGAAGGGCAACAGGCACCGACTTTATCATATCCCTGTCTGCAGATGATTTTTCTCGTGCCAGCAACAAATATGTTGGCAAGCTTTTGGTCGATAGAAACTTTACTTATCATCATATCAATTTTCACCGTGCTTCTTGTCATCTTCTCTTCAACTTGATGTCTAATTTTTTGGGTACCAAGTTCAGCATATATGACAGTCAACCTCCACATGATGCTGCAATTCAACCAAATTGTCAATCTAGCAGGAGATTTCATTCTAAGCAGGTGTCACCGAGAGTTCCAGCATGTAGCTATCTTGTTAGCACTGTTTCCTATGAGCTGAACGTCCTCTGCACTAGAGGACCAAGAAAAATGCACTGCATCATGAACTCCATCCCTGTCTCAGCTATTCAGGAAGGGGGCAATGCCCCAACACCAACATCTTTCCCTCAAATATTTGATGAACCTTTTTCTCAATCGCCAGCAATCAAAGAAAAGGTTCCGATTACAGATTCAAACCCTGCAAGCTTATCAGAGATACCAGAAACGAGCCAAGGCTCAAATGAGTGTTTAGTACTGAAAAACAAGGCTCCCAGATGGCATGAGCACCTGCAGTGCTGGTGCCTAAACTTCAAGGGCCGTGTTTCAGTGGCTTCTGTTAAGAACTTTCAGCTTGTAGCTGCTGTTGATCCATCTCATAATATTTCTGCTGAGGAGCAAGAAAAGGCAATCTTGCAGTTTGGAAAGATTGGAAAAGACATATTCACCATGGATTACCGTTATCCACTCTCTACCTTCCAAGCCTTTGCCATATGCTTGAGCTGCTTTGACACTAAACCAGCCTGTGAATGA 1317 0.4336 MSLRSIVRELKEMRDGIGSTSKRGAEIKCRLSRTKSHVAPDILATPFDPIQQGQWANLPSELLLDIIRRVEESETSWPARAVVVFCASVCKSWRSITKEIVKTPEQCGRITFPISLKQPGPRDSPIQCFIRRNKETSTYLLYFGLVPSENDSNKLLLAAKRIRRATGTDFIISLSADDFSRASNKYVGKLLVDRNFTYHHINFHRASCHLLFNLMSNFLGTKFSIYDSQPPHDAAIQPNCQSSRRFHSKQVSPRVPACSYLVSTVSYELNVLCTRGPRKMHCIMNSIPVSAIQEGGNAPTPTSFPQIFDEPFSQSPAIKEKVPITDSNPASLSEIPETSQGSNECLVLKNKAPRWHEHLQCWCLNFKGRVSVASVKNFQLVAAVDPSHNISAEEQEKAILQFGKIGKDIFTMDYRYPLSTFQAFAICLSCFDTKPACE 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr6798g00001 438 PANTHER TUBBY-RELATED 45 436 - -
Mupr6798g00001 438 Pfam Tub family 201 433 IPR000007 -
Mupr6798g00001 438 Pfam Tub family 116 191 IPR000007 -
Mupr6798g00001 438 ProSitePatterns Tub family signature 1. 366 379 IPR018066 -
Mupr6798g00001 438 SUPERFAMILY F-box domain 49 99 IPR036047 GO:0005515
Mupr6798g00001 438 Gene3D - 49 101 - -
Mupr6798g00001 438 CDD F-box_AtTLP-like 55 99 - -
Mupr6798g00001 438 Pfam F-box domain 55 102 IPR001810 GO:0005515
Mupr6798g00001 438 Gene3D Tubby Protein; Chain A 114 438 IPR025659 -
Mupr6798g00001 438 PRINTS Tubby superfamily signature 366 382 IPR000007 -
Mupr6798g00001 438 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Mupr6798g00001 438 PRINTS Tubby superfamily signature 210 234 IPR000007 -
Mupr6798g00001 438 PRINTS Tubby superfamily signature 395 414 IPR000007 -
Mupr6798g00001 438 PRINTS Tubby superfamily signature 416 438 IPR000007 -
Mupr6798g00001 438 PRINTS Tubby superfamily signature 259 286 IPR000007 -
Mupr6798g00001 438 PRINTS Tubby superfamily signature 348 365 IPR000007 -
Mupr6798g00001 438 SUPERFAMILY Tubby C-terminal domain-like 104 438 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr6798g00001 Mupr-Chr6798 1408 3359 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr6798g00001 1 438 TUB Transcription Factor Family AT2G18280 59.226 1.68e-177 499
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Mupr6798g00001 Tub 7.6e-77 CL0395