Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr6781g00001 ATGTCAAACATCACAAGTTGTGATAGTGGGAGCTTCTCTACAGAGAATACCAGAGAAGATGCAGCAGTTAAACAGCAACCTGAGATGCTTGGTCAGTTCCATAGTCCACATTCTCATACTTCAACTACAACAACAAATAATAGCAATGGTTCCAACACAAATTCACAACCACCTGCACCTGTTAAGAAGAAAAGGAGCCTGCCAGGAAATCCTGATCCAAGTGCTGAAGTTATAGCTCTATCACCAACCACACTAATGGCCACAAACCGGTTCATATGTGAAATCTGCAACAAAGGGTTTCAAAGAGATCAAAACCTTCAGTTGCACCGGCGAGGCCACAACTTGCCGTGGAAGCTTAAACAGAGAACCAGCACAGAAGTTCGAAAGCGCGTTTATGTTTGTCCAGAACCTTCATGCGTCCACCACAACCCGGCAAGAGCACTCGGCGATCTCACTGGCATTAAAAAGCACTTCTGCAGAAAGCACGGCGAGAAGAAGTGGAAATGTGATAAGTGCTCAAAGAAATACGCTGTTCAGTCTGACTGGAAAGCCCATTCGAAAATCTGCGGTACAAGGGAATACAAATGTGACTGTGGAACCATCTTTTCCAGAAGAGACAGCTTCATTACGCACAGAGCATTCTGTGACGCACTAGCTGAGGAGAACAACAAAGGCAACGAAGGACAGTTGCCAAAGATAGGTCCCAACATGCAATGCCAAGCAATCCCAAATCTGGTTTCATCATTACCAATCAACATTGTTCCAACCCCACAAATCGGTGGCACTTCGGAGTTCAATCATTCCGAGCACAAGCACCCGCTATCACTTCCTCACGAGCTCATGCCAATGCCCGCACCGAAACCCTTCACCAGCAACAACGTTAACATGGCCGGAACAGTGTTCACGAGAAGCCTCTCATCCACCACCTCGCCCTCTCTTCAACTCAGCTCAAACATGTTTGAGGAGAATGGGCTGCACCTGGCGGCAGGGTCGCCGCACATGTCCGCCACGGCGCTGCTGCAGAAGGCGGCGCAAATGGGAGCGACGGTGAATGAAAAAAGCTTCTCCACAAGCATGGCGCCACCGTCGTTCGGCGTGCTGCAGCAGCAACCGAATGGACAGTCTTTCATGAACCAGTACATGAATGGTGGCCAACAGGATGTTAACATTTCTACTCAGTATAATAGTTTCGGTGCAAATGCGATGGGTGGAGGAAGCGTTGGGATGAACGGTGTGGACATGTTCAACGCTATTTTGGATCAGAGCAAGGCTTTGTCGAAGATCATAGAGCAAAACAGTCGAGGCAGTAGTGGAGGAGCAACCAACGGAGGGTCCAGTGGTGCTGTTAATGTTGTTGGTGGAAGTAAAGGTAGTGGGGATGTTATGACTCTGGACTTTTTGGGCATAGGAGGGGGAAGTAGTGGTGGTGGTGGTGGTGGTGGTGCACATGGGAATTTTTATGGTGGTGTTCAACAACAAGGGGAAACTGGTGCACCTGAAGAGGTTTGGAGAAATTGGTCTATGCAAGCCAGATTTGGGACATGGAACCCAAACCCAATTCGTATAGCACAATGTTCCGGAGAGCAATCTCCGGCGGAGGAATTTGCACCATTAGCCACGAAATTTCGGCGGCGGCTTCTTGTGGGCGTTGGGTCAGCTTCAGTTGTGGCTGTGGGTGCAAACTTTGGTGGCATCACCAGTTTTCTTCTCGGGTTATCACCACAGAGTGGTCGTAATCTGAAGCTAGACGTGCTTTATCCCATTGGCGGCTACAGCCGTTGCTTTGACACAAAGGAAGGATTCGAATTCATATACCCAGCAAATTGGGTGGGAGATCAGACGGTGCTGTATCGAGCTGCTAAGAAAAGAGAAATGGAACGATCATTGGATCCTCCTCCCCTGAATGTACGGCGCCGATCTAACATCAACGAACCGGTTGTTGCATTTGGTCCCCCTGGTTCCACTGGAGAACTCAATGTTAGTGTGATTGTTTCACCTGTTGCTTCAGACTTCTCGATTGAGGCATTTGGAGGGCCAGATGAGGTGGGTGAAGCAGTGATTCGAAGCATAACAGGGTCAGGGCAACGCCCTGACGTGAAGGGCACATTGGTAAAATCAAGTTTGAGAGAGGATTCCATTAGAAATGCCAAATACTACGAACTCGAGTTCAGAGTTGAGAGTCCCTTGTTTAAGCGACACAACGTTTCTGTCTGCTGCGCTCGTGGTGGTAGGCTTTTTACTTTAAATGCTCAAGCACCTGAATCAGAGTGGCCAGTATTGAAGTCAGATTTCTATAGGATTGCTAATTCATTTAGCCTCACAACTTAA 2328 0.4837 MSNITSCDSGSFSTENTREDAAVKQQPEMLGQFHSPHSHTSTTTTNNSNGSNTNSQPPAPVKKKRSLPGNPDPSAEVIALSPTTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSTEVRKRVYVCPEPSCVHHNPARALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTIFSRRDSFITHRAFCDALAEENNKGNEGQLPKIGPNMQCQAIPNLVSSLPINIVPTPQIGGTSEFNHSEHKHPLSLPHELMPMPAPKPFTSNNVNMAGTVFTRSLSSTTSPSLQLSSNMFEENGLHLAAGSPHMSATALLQKAAQMGATVNEKSFSTSMAPPSFGVLQQQPNGQSFMNQYMNGGQQDVNISTQYNSFGANAMGGGSVGMNGVDMFNAILDQSKALSKIIEQNSRGSSGGATNGGSSGAVNVVGGSKGSGDVMTLDFLGIGGGSSGGGGGGGAHGNFYGGVQQQGETGAPEEVWRNWSMQARFGTWNPNPIRIAQCSGEQSPAEEFAPLATKFRRRLLVGVGSASVVAVGANFGGITSFLLGLSPQSGRNLKLDVLYPIGGYSRCFDTKEGFEFIYPANWVGDQTVLYRAAKKREMERSLDPPPLNVRRRSNINEPVVAFGPPGSTGELNVSVIVSPVASDFSIEAFGGPDEVGEAVIRSITGSGQRPDVKGTLVKSSLREDSIRNAKYYELEFRVESPLFKRHNVSVCCARGGRLFTLNAQAPESEWPVLKSDFYRIANSFSLTT 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr6781g00001 775 Pfam PsbP 593 772 IPR002683 GO:0005509|GO:0009523|GO:0009654|GO:0015979|GO:0019898
Mupr6781g00001 775 MobiDBLite consensus disorder prediction 1 20 - -
Mupr6781g00001 775 FunFam protein indeterminate-domain 12-like 70 138 - -
Mupr6781g00001 775 Gene3D Mog1/PsbP, alpha/beta/alpha sandwich 587 773 - -
Mupr6781g00001 775 Gene3D Classic Zinc Finger 146 224 - -
Mupr6781g00001 775 ProSiteProfiles Zinc finger C2H2 type domain profile. 91 113 IPR013087 -
Mupr6781g00001 775 MobiDBLite consensus disorder prediction 31 60 - -
Mupr6781g00001 775 NCBIfam photosystem II reaction center PsbP 659 773 - -
Mupr6781g00001 775 MobiDBLite consensus disorder prediction 1 76 - -
Mupr6781g00001 775 FunFam protein indeterminate-domain 5, chloroplastic-like 145 224 - -
Mupr6781g00001 775 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 41 485 IPR031140 -
Mupr6781g00001 775 Gene3D Classic Zinc Finger 70 136 - -
Mupr6781g00001 775 SUPERFAMILY beta-beta-alpha zinc fingers 90 187 IPR036236 -
Mupr6781g00001 775 SUPERFAMILY Mog1p/PsbP-like 592 773 IPR016123 -
Mupr6781g00001 775 SMART c2h2final6 167 187 IPR013087 -
Mupr6781g00001 775 SMART c2h2final6 132 162 IPR013087 -
Mupr6781g00001 775 SMART c2h2final6 91 113 IPR013087 -
Mupr6781g00001 775 ProSitePatterns Zinc finger C2H2 type domain signature. 93 113 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr6781g00001 Mupr-Chr6781 3838 12212 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr6781g00001 48 348 IDZ Gene Family AT3G50700 57.716 2.11e-118 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mupr6781g00001 PsbP 4.4e-24 CL0619
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr6781g00001 - - gmx:100785295 836.639