Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr6723g00003 ATGGTGACGACGGGGATTGAGGAAGTGCGAACTCTATGGATTGGGGATTTGCAGTACTGGGTGGACGAGTCGTATCTTTCACAGTGCTTCGCCCACAGCGGAGAAGTGGTTTCCATAAAAATCATACGGAACAAGATGACGCAGCAGCCGGAGGGGTACGGGTTCGTGGAGTTCGTTTCGCACGCCTCAGCGGAAGCCTTTCTTCGGACGTACAACGGCACTCAAATGCCCGGCACCGAACAAACCTTCAGGCTCAATTGGGCCTCGTTCGGCGATTCTGGGCCCGACCACTCTATTTTCGTGGGCGATCTTGCTCCCGACGTCACCGATTTCCTCCTCCAGGAGACTTTTCGGGCCCATTATCCTTCGGTTAAAGGGGCCAAAGTCGTGACGGACCCCGTCACAGGCCGGTCCAAGGGATATGGGTTCGTTAAGTTCGCGGACGAGACACAGAGGAATCGCGCCATGACCGAAATGAACGGCGTTTATTGCTCTACTCGCCCTATGCGTATAAGCGCCGCTACTCCTAAAAAGACCGCTTCTTTTCAACACCAATATGCTCCACCTAAAGCAATATATCAAATTCCTTCATATACTGCTCCGGTGAATACTGTTCCGCCAGAAAATGATGTGAATAATACCAATGTTTTTATTGGTAATTTGGATCTTAATGTGACGGAGGAGGAGCTGAAGCAAACCTTTGTGCAATTTGGAGATGTTGTGTCGGTCAAAATTTATGCGGGCAAAGGATATGGTTTTGTTCAATTTGGAACTAGAGCGTCTGCTGAAGATGCCATTCAGAGGATGCAGGGGAAGATAATAGGTCAACAAGTGATCCAGATTACGTGGGGTAGTACCTCGGCAGCTAGACAGGACGTACCTGGTGGCTGGGGCACACTGATGGATCCAAGTCAATGGAGTGCCTACTATGGATATGGGCAGGGTTATGAAGCATATGCTTATGGTGCTACTCATGATCCCTCCTTGTATGCTTATAGTGCATATGCTGGTTATGCACAATACCCTCAACAGGTTGAAGGTGCTCAAGACATGTCAGCAGTGTCTATGGAGGAGTTGTATGATCCCCTGGCAATGCCTGATGTCGATAAATTGAATGCTGCATATCTTTCAATACACGGAAATGCCATTTTGGGGCGATCCCTTTGGCAGAAAACTTCGCAATCTTTACAGCAAGCCTAG 1200 0.49 MVTTGIEEVRTLWIGDLQYWVDESYLSQCFAHSGEVVSIKIIRNKMTQQPEGYGFVEFVSHASAEAFLRTYNGTQMPGTEQTFRLNWASFGDSGPDHSIFVGDLAPDVTDFLLQETFRAHYPSVKGAKVVTDPVTGRSKGYGFVKFADETQRNRAMTEMNGVYCSTRPMRISAATPKKTASFQHQYAPPKAIYQIPSYTAPVNTVPPENDVNNTNVFIGNLDLNVTEEELKQTFVQFGDVVSVKIYAGKGYGFVQFGTRASAEDAIQRMQGKIIGQQVIQITWGSTSAARQDVPGGWGTLMDPSQWSAYYGYGQGYEAYAYGATHDPSLYAYSAYAGYAQYPQQVEGAQDMSAVSMEELYDPLAMPDVDKLNAAYLSIHGNAILGRSLWQKTSQSLQQA 399
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Mupr6723g00003 399 FunFam Polyadenylate-binding protein RBP47B 9 88 - -
Mupr6723g00003 399 CDD RRM1_SECp43_like 11 91 - -
Mupr6723g00003 399 FunFam Polyadenylate-binding protein RBP47B 89 187 - -
Mupr6723g00003 399 SUPERFAMILY RNA-binding domain, RBD 95 183 IPR035979 GO:0003676
Mupr6723g00003 399 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 97 176 IPR000504 GO:0003723
Mupr6723g00003 399 Gene3D - 199 293 IPR012677 -
Mupr6723g00003 399 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 8 290 - -
Mupr6723g00003 399 CDD RRM2_SECp43_like 96 175 - -
Mupr6723g00003 399 SMART rrm1_1 215 282 IPR000504 GO:0003723
Mupr6723g00003 399 SMART rrm1_1 11 86 IPR000504 GO:0003723
Mupr6723g00003 399 SMART rrm1_1 98 172 IPR000504 GO:0003723
Mupr6723g00003 399 SUPERFAMILY RNA-binding domain, RBD 7 78 IPR035979 GO:0003676
Mupr6723g00003 399 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 99 164 IPR000504 GO:0003723
Mupr6723g00003 399 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 216 279 IPR000504 GO:0003723
Mupr6723g00003 399 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 80 IPR000504 GO:0003723
Mupr6723g00003 399 Gene3D - 96 173 IPR012677 -
Mupr6723g00003 399 SUPERFAMILY RNA-binding domain, RBD 193 314 IPR035979 GO:0003676
Mupr6723g00003 399 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 214 286 IPR000504 GO:0003723
Mupr6723g00003 399 FunFam polyadenylate-binding protein RBP45 198 293 - -
Mupr6723g00003 399 Gene3D - 9 89 IPR012677 -
Mupr6723g00003 399 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 90 IPR000504 GO:0003723
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Mupr6723g00003 Mupr-Chr6723 28898 31377 Dispersed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr6723g00003 98 281 Eukaryotic Initiation Factors Gene Family AT1G49760 29.101 5.17e-16 78.2
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr6723g00003 - - gmx:100813616 717.613