LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mupr6708g00001	ATGGTCCTTCGAAGAAATATTTCTTTTCTTTGTCTACTTGTTACTCTGACATCTGAAGCAATTTCTAAGCCCGAATATGAATACGCTGTCTGCATAAAAGAAGGTGGAGATTATGCCCCTAATAGCACCTACGAGAGCAACCTCAATACCGTTCTTTCAAGGCTCACTTCAAACACGCAAATTGACTATGGCTTCTACAATTCCTCCTACGGCCAAGACTCTGATAGAGTCTATGCAACTGGGCTTTGCAGAGGAGATGTTACCCCACAAAAATGCCGTACTTGCCTTAAAAATTCTAGTTTCCTTCTCCTAAAGCAGTGTCCACATCAGAGGCGGGCAGCAGGAGGATATGAAGAATGCATGTTGCACTATTCATATCGGTCGGTATTAGGTTACTATGATTCTGATTTCCGGGTCTACTTGCGGAGTGAAACTAGTGTAATAGATTGGGATCAGTACAGTTATATGCTGAACAAGTTGCTGTCAACACTTAGAGTAAAAGCTGCAACAACAGACTCATATCTCAATCGTAAATATGCTGCAGGAAATGCAACAGATCCGAGTTCTGAAACTGTACATGCTGTTGTTCAGTGTTCACCTGATTTGACACTGGCAGAATGCAACGACTGCTTAGATGGTGCCTTTTCAGAAATACCAAAATGTTGCAATAACAGGTCAGGTGGTATGGTTATTAAATTTAGCTGTAACTTCAGATACGACAACTCCAGATTTTATGAGCCTACGCCTGATACGCTCACACTACAATTGTCATCACTAGGATCTCCATCTCCATCTCCATCTCCATCTCCTCCTTCACCTACACCATCCACCACTGCAAATTTCTCAGAGACTACTTATCATGGAAAAAGCAACAGATCAAGAGCTGTCATCGCCAAATACGTTTTTCCTACGGTTGTCTTTGTTGGGTTGCTGATCTTTATTTGCATCTATTTAAGGTTGAGGAAGCCAAAAAAACATCTTGAGAGTGAAGCTAAGGTTGATGATGAAATTACACAAGCACAGTCATCACAATTTGACTTCGATACCATCAGAATAGCCACAAACAACTTTTCTGATGCAAACAAGCTTGGACAAGGTGGATTTGGACCTGTTTACAAGAGCACTCTCTTCAATGAACAAGAAGTAGCAGTCAAAAGGTTATCTAGCAACTCTGGTCAAGGAGATATTGAATTCAAGAATGAAGTGCTATTAATGTCCAGACTTCAGCATCGAAATTTAGTTAGGCTCCTTGGTTTCTGTTTTGAAAGAGAAGAGCGAATCCTTGTCTATGAGTTTCTTCCCAATAAAAGTCTTAACAACTTCATATTTGATCCTGTCCAGCGTTCACATTTGGATTGGAAAAAACGCTACAAAATAATTGAAGGCATTGCACGTGGCCTTCTTTATCTTCATCAGGATTCTCAGCAGAGGATTGTTCACCGTGATCTCAAATTGAGTAATATTCTTTTAGATGCCAATATGAATCCTAAGATTTCAGATTTTGGCTTGGCAAGGCTATTTTTTGTGGATCAAACTCAGTTTAATGCAAGTAAAATTGCAGGAACCTAG	1569	0.4015	MVLRRNISFLCLLVTLTSEAISKPEYEYAVCIKEGGDYAPNSTYESNLNTVLSRLTSNTQIDYGFYNSSYGQDSDRVYATGLCRGDVTPQKCRTCLKNSSFLLLKQCPHQRRAAGGYEECMLHYSYRSVLGYYDSDFRVYLRSETSVIDWDQYSYMLNKLLSTLRVKAATTDSYLNRKYAAGNATDPSSETVHAVVQCSPDLTLAECNDCLDGAFSEIPKCCNNRSGGMVIKFSCNFRYDNSRFYEPTPDTLTLQLSSLGSPSPSPSPSPPSPTPSTTANFSETTYHGKSNRSRAVIAKYVFPTVVFVGLLIFICIYLRLRKPKKHLESEAKVDDEITQAQSSQFDFDTIRIATNNFSDANKLGQGGFGPVYKSTLFNEQEVAVKRLSSNSGQGDIEFKNEVLLMSRLQHRNLVRLLGFCFEREERILVYEFLPNKSLNNFIFDPVQRSHLDWKKRYKIIEGIARGLLYLHQDSQQRIVHRDLKLSNILLDANMNPKISDFGLARLFFVDQTQFNASKIAGT	522

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mupr6708g00001	522	SMART	serkin_6	357	520	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mupr6708g00001	522	MobiDBLite	consensus disorder prediction	256	286	-	-
	Mupr6708g00001	522	ProSiteProfiles	Gnk2-homologous domain profile.	135	244	IPR002902	-
	Mupr6708g00001	522	ProSiteProfiles	Protein kinase domain profile.	357	522	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mupr6708g00001	522	FunFam	Cysteine-rich receptor-like protein kinase 10	320	432	-	-
	Mupr6708g00001	522	Gene3D	Phosphorylase Kinase; domain 1	320	432	-	-
	Mupr6708g00001	522	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	34	522	-	-
	Mupr6708g00001	522	Pfam	Protein tyrosine and serine/threonine kinase	361	512	IPR001245	GO:0004672\|GO:0006468
	Mupr6708g00001	522	Pfam	Salt stress response/antifungal	151	241	IPR002902	-
	Mupr6708g00001	522	Pfam	Salt stress response/antifungal	31	125	IPR002902	-
	Mupr6708g00001	522	Gene3D	Transferase(Phosphotransferase) domain 1	433	522	-	-
	Mupr6708g00001	522	FunFam	Cysteine-rich receptor-like protein kinase 10	137	244	-	-
	Mupr6708g00001	522	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	478	490	IPR008271	GO:0004672\|GO:0006468
	Mupr6708g00001	522	Gene3D	-	135	244	IPR038408	-
	Mupr6708g00001	522	Gene3D	-	25	128	IPR038408	-
	Mupr6708g00001	522	ProSiteProfiles	Gnk2-homologous domain profile.	26	129	IPR002902	-
	Mupr6708g00001	522	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase B120	433	522	-	-
	Mupr6708g00001	522	FunFam	Cysteine-rich RLK (RECEPTOR-like protein kinase) 10	24	129	-	-
	Mupr6708g00001	522	SUPERFAMILY	Protein kinase-like (PK-like)	338	520	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mupr6708g00001	Mupr-Chr6708	1739	4208	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mupr6708g00001	9	522	Receptor kinase-like Gene Family	AT4G05200	43.629	1.56e-133	401

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Mupr6708g00001		PK_Tyr_Ser-Thr	1.5e-32	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mupr6708g00001	-		-	gmx:100790058	830.861