Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr6691g00002 ATGCAGATATTCGTGAAAACCCTAACAGGGAAGACCATAACCCTAGAGGTCGAGAGCAGCGACACCATCGACAATGTGAAGGCCAAGATCCAAGACAAGGAAGGCATCCCTCCGGATCAGCAGCGTTTGATATTCGCCGGTAAGCAGCTAGAAGATGGAAGGACCTTGGCTGATTACAACATCCAGAAGGAATCCACCCTCCACCTCGTCCTCAGGCTTCGCGGCGGCATCATCGAACCTTCCTTGATGGCTTTGGCTCGCAAATACAACCAAGACAAGACCATCTGCCGCAAATGCTATGCTCGTCTGCATCCTAGGGCTGTGAACTGCCGCAAGAAAAAGTGTGGCCATAGTAATCAGGTTCGAATTCGGTTTGTCATTGACAGCATCCTTGCCACGTTGCCACCCCGTTATATAATGGTCACAGCATTCTTGCTACTTGAAATCGTTTGGTTGCTCGTCGAAAGCTTTGGCATCTGTATTGGTAATCTTTATGAGCTTAATCTGAGGTTATCTAATATGGTTGTCGCACTTTGA 537 0.4823 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKTICRKCYARLHPRAVNCRKKKCGHSNQVRIRFVIDSILATLPPRYIMVTAFLLLEIVWLLVESFGICIGNLYELNLRLSNMVVAL 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr6691g00002 178 FunFam ubiquitin-60S ribosomal protein L40 79 127 - -
Mupr6691g00002 178 SMART ubq_7 1 72 IPR000626 GO:0005515
Mupr6691g00002 178 SUPERFAMILY Zn-binding ribosomal proteins 76 123 IPR011332 GO:0006412
Mupr6691g00002 178 Gene3D - 1 79 - -
Mupr6691g00002 178 PANTHER UBIQUITIN 1 90 - -
Mupr6691g00002 178 FunFam Ubiquitin-60S ribosomal L40 fusion 1 78 - -
Mupr6691g00002 178 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Mupr6691g00002 178 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Mupr6691g00002 178 CDD Ubl_ubiquitin 1 76 - -
Mupr6691g00002 178 PRINTS Ubiquitin signature 53 74 IPR019956 -
Mupr6691g00002 178 PRINTS Ubiquitin signature 11 31 IPR019956 -
Mupr6691g00002 178 PRINTS Ubiquitin signature 32 52 IPR019956 -
Mupr6691g00002 178 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Mupr6691g00002 178 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Mupr6691g00002 178 SMART Ribosomal_L40e_3 77 128 IPR001975 GO:0003735|GO:0005840|GO:0006412
Mupr6691g00002 178 Pfam Ribosomal L40e family 78 123 IPR001975 GO:0003735|GO:0005840|GO:0006412
Mupr6691g00002 178 Gene3D - 80 125 IPR038587 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr6691g00002 Mupr-Chr6691 3299 5126 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr6691g00002 1 122 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 97.541 8.90e-87 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr6691g00002 K02927 - cave:132167306 246.514