Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr668g00002 ATGGCCTTGATAACGAGCAATTCGAGAACTCAAGGGGGACATTCAAGTAATTTGACCTCATCTACAGGCTCCTTTGTTGGACGCAGTGGGGGCCTAAGGTTAGACCAACTCAAGCTCCCAATACTAATTTTCAAGGTGGGACATGAAACTTATCTTATCAAGAGCTTATGGAGAGAAGAAACAAGGGGTTGTGGTTCAAATATGGGCGACACTATAGCCCCACCCACCAATGCCTTGACAAGCATTTGTGTCTCCTTATCCGGGAGGGGAGGAGAGTCTCAAAGAATCATTAATAGCACTGGAGTGAGGATTGGGAAATATGATATAGTGGTAGATGCTTATGTGTTGGACTTAGGGGGAGTGGACCTTATTTTGGGGGTGGAGTGGTTGGAGACGTTTGGGAAGACCACCATGGATTGGAGAAGGAAGACAATCAGCTTTGAGAAGGATGGTCGCATCATCACGCTCCAGGGGTACCAAATTCAGGATAACTACCCAATAGTAGCCTTGCAAGGAATACTTAAGGAACATGGAGCAACAAGAAACATTTCCAGCAAAGATGGAGAGCTTGATCAAGTCTTAAAAGAGCACCACTTTGTTCTACAAGATAGGAGAGGACTTCCTCCACAGAGAGCTCATGATCATGCCATCATTTTGCAGCCAGGCACCAAACCAGTAAGTGTTAGACCTTTTCGTTATTCCTATCATCACAAAGATGAAATTGAGAGGCAAATAAGGAAGCTACAAGCAGAGGGCACTATCAAAAACAGCACCAGCCTGATAATATTAGTGAAGGAGAAGGACGGTTTACATTTACATCACTTGGATGAAGTGCTCAAGCTCTTGACTCTACATCATTTTGTGGCAAATAGAAAGAAGTGTTTGTTTGGCCAGCAGTCAATAGAATACCTTGGCCATATCATTTCAGAAAATGGAGTGGAGATGGACCCTTCTAAGGTTCAAGTTGTCTTAGAATGGTCAGTTCCCCAAGATGTCAAAGGAGTGAGGGGGTTTCTTGGCCTCGCGGGTTATTGTAGAAAGTTTATTAAGGATTACAGAAGGATTGCTCGGCCTCTAACAACTTTAACTAAGAGGGACGGGTATCATTGGGGGGAAGAGGCCCAACAAGCCTTTGATTGCTTTAAGAATTGTTTGGAATCGTTTCCAGTCTTGGCACTGCCAGATTTCACTCAGGAAATTTGTGATAGAAGGCATTACCTCATGGGTAGAAGCTTCAAAGTGTTCACTGACCACAGAAGCTTGAAGCATCTTCTTCACCAGAAAGTCATCTCTGTTGACCAGCAGTATTGGTTGTCCAAACTATTAGGGTACCAATTTGAAGTTGTATGCAAACTGGGCCGAGAAAGTAAGGCAGCAGATGCCTTGTCAAGAAGGGACACCAATGCTGAATTGAACACCATATCTATAAGTCCTTGTTGGTTAGATTTTGCCAAATTGAAGGAGGAAGCCCTTGCTGACCAAGAATTAATTGATCTGCAGAATGCATTGTCAGTGTCAACATCTGGACTTAATGCAGTGATTCCTAGTACAAACCAGCTTACCATCTTCTACAATGGGAGTGTTTGTGTCTATGATGGAATCCCTGCAGAAAAGGTGCATGAAATAATGCTTCTTGCTGCTGCTGCTGCCAAGTCTACTGAAATGAAGAAGATTGGGACCCAAAATACCCTCATTTCACCTGTTCCCACGAGGCCTTCTTCTCCACATGAAATCACTAACAATATTGCTTCCTCGCAGAAGGGTTCCATCTGCAGGCTGCAAGGTGAATTTCCAATAGCACGCAGGCATTCCCTTCAAAGGTTTCTCGAGAAGCGGCGAGACAGGCTTGGGAGCAAGGCACCTTATCCTTCCTCATCAACAACAAAAGTGGCTGACAACATAGAGAACAACTTCTGCGCTGACAATGCACCAGAATTGATTTCCTTGAACCGATCCGAGGAGGAATTTCAGCCAACTGCTGTCTAA 1986 0.4431 MALITSNSRTQGGHSSNLTSSTGSFVGRSGGLRLDQLKLPILIFKVGHETYLIKSLWREETRGCGSNMGDTIAPPTNALTSICVSLSGRGGESQRIINSTGVRIGKYDIVVDAYVLDLGGVDLILGVEWLETFGKTTMDWRRKTISFEKDGRIITLQGYQIQDNYPIVALQGILKEHGATRNISSKDGELDQVLKEHHFVLQDRRGLPPQRAHDHAIILQPGTKPVSVRPFRYSYHHKDEIERQIRKLQAEGTIKNSTSLIILVKEKDGLHLHHLDEVLKLLTLHHFVANRKKCLFGQQSIEYLGHIISENGVEMDPSKVQVVLEWSVPQDVKGVRGFLGLAGYCRKFIKDYRRIARPLTTLTKRDGYHWGEEAQQAFDCFKNCLESFPVLALPDFTQEICDRRHYLMGRSFKVFTDHRSLKHLLHQKVISVDQQYWLSKLLGYQFEVVCKLGRESKAADALSRRDTNAELNTISISPCWLDFAKLKEEALADQELIDLQNALSVSTSGLNAVIPSTNQLTIFYNGSVCVYDGIPAEKVHEIMLLAAAAAKSTEMKKIGTQNTLISPVPTRPSSPHEITNNIASSQKGSICRLQGEFPIARRHSLQRFLEKRRDRLGSKAPYPSSSTTKVADNIENNFCADNAPELISLNRSEEEFQPTAV 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr668g00002 661 Pfam RNase H-like domain found in reverse transcriptase 404 444 IPR041373 -
Mupr668g00002 661 Gene3D - 318 405 IPR043128 -
Mupr668g00002 661 MobiDBLite consensus disorder prediction 1 22 - -
Mupr668g00002 661 SUPERFAMILY DNA/RNA polymerases 202 449 IPR043502 -
Mupr668g00002 661 Gene3D Acid Proteases 72 157 IPR021109 -
Mupr668g00002 661 FunFam Transposon Tf2-6 polyprotein-like Protein 318 403 - -
Mupr668g00002 661 PANTHER TRANSPOSON TY3-I GAG-POL POLYPROTEIN 261 402 - -
Mupr668g00002 661 SMART tify_2 513 548 IPR010399 -
Mupr668g00002 661 Gene3D - 158 315 IPR043128 -
Mupr668g00002 661 ProSiteProfiles Tify domain profile. 513 548 IPR010399 -
Mupr668g00002 661 Pfam Jas motif 598 622 IPR018467 -
Mupr668g00002 661 CDD retropepsin_like 102 131 - -
Mupr668g00002 661 Pfam tify domain 515 547 IPR010399 -
Mupr668g00002 661 Pfam Retroviral aspartyl protease 91 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr668g00002 Mupr-Chr668 10005 14950 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr668g00002 518 629 Tify Gene Family AT5G20900 50.420 2.91e-26 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Mupr668g00002 RVP_2 0.00024 CL0129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr668g00002 - K13464 gmx:100306045 290.812