Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr6679g00002 ATGAAATATTATGGTCTTAGAAAAAAGAACAATTACATGCTTGCCCACGTGAACAAAAGCGACCTCATTTCATTCCCTAGCAACTTCCTTTGTTCAAAAAGCTTCCCCATCCCCACCGAGTCACCACCTACTCGAGGCCACTCACTCGGTCACTCGGACTCAGTCACCTTCGGCGCCATGAATCTGAGCTACGAACAGAGGCTTCAGGTTGTTGCCAAAATCATACTCGACAATGATGCATGCGCCGGCGACGCACCGCCGTGTGAGGAAGAGCTTGGGCTTAGGGCGACCGCGACCCTCAAGCCGCATCAGGTGGAAGGGGTTTCGTGGCTCATACGGAGGTACAAACTCGGCGTCAACGTTATCCTCGGTGAGATTATACACTCTTTCAATGTGTTTGATTGCTCTGAATGTCTAAAAATTTATGGGACTGGGAAAGACTTTGCAAGCTATCTCCTTTTTAAGCTATTTAAAATGGTTATATGTCCTTTAAGTGTGACAGATGGTTGGGTGTCAGAGATAATCAAGTTCACCCCTAAACTAGAAGTCTTCAAATATGTTGGTGATAAAGAATACAGGTGCAATCTACGCATGAAAATACATGAACATGTAACAAGGCAGTCATCGACACTGAATGTCTTGTTGCCTTTTGATGTGCTGTTAACATCATATGACATTGCACTGATGGATCAGGATTTTCTTTCTCAAATACCATGGCAGTATGCAATCATTGATGAAGCCCAGAGACTTAAAAACCCATCAAGCGTTTTATTTAACGTTCTCAAAGATCGTTATATAATGCCAAGACGGTTGTTGATGACTGGCACGCCTATTCAAAACAACCTTTCAGAGCTGTGGGCGTTGGTGTATTTTTGCATGCCTTCTGTCTTTGGTACAGTGGATAAGTTCCTTTCTACATTTAAGGACATCAGTGATCTTTCATCAGTTCATGATGTTCTGAAGGTAAAGGAGAGACTTAAAATTCTGAGAAGTGTTTTGGGAGCCTTTATGCTTCGACGGACCAAATCAAAGCTTATTGAGTGTGGAAATTTAGTACTGCCACCTCTCACAGAGACAACTGTGTTAGTACCCCTTGTCATCCTACAGAAAAAAGTCTACATGTCAATATTGAGGAAGGAACTTCATAAGCTACTTGCACTATCTTCTGGAACTTCAAATCATCATTCACTACAGAATATTGTGTTACAACTAAGAAAAACATGCAGCCATCCTTATCTCTTTCCAGGTATTGAGCCTGAACCTTACGAAGAAGGTGAACATCTGGTTCAGGATCCATTATCTCTTTTTTGGGAATCCCAACTATCACAACGGAGAAACTCAACTGGAAAAATTATAGAGCTTGTTGAGTTGTGGTTTTTGGGACAAGAGTTTCATGACCATTTGAAGAAACAAGAGGCTGAAATACCAGAAGAGAACAGAGCTCCATGGCTGAAACTTGACTATCAACTATGTGCTATTTTGTGGCAGTTCGTTAGTCCTGAATTATTAGAAATCTTAAGGTTGTTCAAGACCTGCTATTCTTTTTGGACGAATGCTAGAGATGTTTTCGCTAATGATGCTCAACATCTATTTGATTCAACTCAAAAGATTGTTTCTCTTCAACGGACCAATCATGATATGGTGTTGCACATAGCCAAAGCCAGGGCTGCTGCTGAAGAATTGAAAGGTTTACTCGCGTGTAACTCTGTTGAGGAAACAACAAAGCAAATTGACAAACTACTTATGGTTCTAATCCTACGAAGCATGCATCCTGACTATGAGCATGTTTGGGATCAAATCTTGTCAAGTGAGCAGATTCCCTCTATGAATAGCTTGGTTACTAGGCTTCTTCGAGTTCTGATGATTCCTACCATAACCAAAGGTGATGGCATTGTTGTTGAAAATTTTGCTATGGTAGCTTCTCGTGGTAGAGGAAGAAGTGGTCATAATACTAGAGGAATGTCACAAAATGGTAAAGGTGGTTGTGGTAACCTTGTCTGCTCACATTGTGGAAAAGAAGGACACCTACAAAATAAATGTTATGATTTGATTGGTTGGCCAGACAAAACTGCAAATATATCTTCGAGTGATATCCCTTCAAATGGAAGGACTGGTTCTCAATTAATCTCAGATGAAAAGAATCAGGAGTTCCTAAGGCTCAAGTCCAACAACCACGCCCAATCAATTGGTCAAGTTTTTCTATCCTCATCAATTAATTTAAACTTTGTGTTGTACATTCCTAAATGTTCCTATAATTTAATTTCTGAGTCAATTGACTCGACCGGAATACGGGCTAGCTGGTTGGGGAAGGACATGAATCAAGAAGACTATTACTTATCCAACAATCCCTCTATGTTGTGTTTTGCGTTTGTATCTCCAAAGCTTTTGCATAATCGTTTAGGGCACTCCAATCTTGCAAAGCTAAAGTTAATGGTTCCTAGTCTCAATAAACTGTCTACCTTGGACTGTGAGTCTTGTTAA 2481 0.4067 MKYYGLRKKNNYMLAHVNKSDLISFPSNFLCSKSFPIPTESPPTRGHSLGHSDSVTFGAMNLSYEQRLQVVAKIILDNDACAGDAPPCEEELGLRATATLKPHQVEGVSWLIRRYKLGVNVILGEIIHSFNVFDCSECLKIYGTGKDFASYLLFKLFKMVICPLSVTDGWVSEIIKFTPKLEVFKYVGDKEYRCNLRMKIHEHVTRQSSTLNVLLPFDVLLTSYDIALMDQDFLSQIPWQYAIIDEAQRLKNPSSVLFNVLKDRYIMPRRLLMTGTPIQNNLSELWALVYFCMPSVFGTVDKFLSTFKDISDLSSVHDVLKVKERLKILRSVLGAFMLRRTKSKLIECGNLVLPPLTETTVLVPLVILQKKVYMSILRKELHKLLALSSGTSNHHSLQNIVLQLRKTCSHPYLFPGIEPEPYEEGEHLVQDPLSLFWESQLSQRRNSTGKIIELVELWFLGQEFHDHLKKQEAEIPEENRAPWLKLDYQLCAILWQFVSPELLEILRLFKTCYSFWTNARDVFANDAQHLFDSTQKIVSLQRTNHDMVLHIAKARAAAEELKGLLACNSVEETTKQIDKLLMVLILRSMHPDYEHVWDQILSSEQIPSMNSLVTRLLRVLMIPTITKGDGIVVENFAMVASRGRGRSGHNTRGMSQNGKGGCGNLVCSHCGKEGHLQNKCYDLIGWPDKTANISSSDIPSNGRTGSQLISDEKNQEFLRLKSNNHAQSIGQVFLSSSINLNFVLYIPKCSYNLISESIDSTGIRASWLGKDMNQEDYYLSNNPSMLCFAFVSPKLLHNRLGHSNLAKLKLMVPSLNKLSTLDCESC 826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr6679g00002 826 Gene3D - 351 451 IPR027417 -
Mupr6679g00002 826 Pfam SNF2-related domain 159 413 IPR000330 GO:0005524|GO:0140658
Mupr6679g00002 826 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 143 295 IPR014001 -
Mupr6679g00002 826 SUPERFAMILY Retrovirus zinc finger-like domains 648 688 IPR036875 GO:0003676|GO:0008270
Mupr6679g00002 826 Gene3D - 84 350 IPR038718 -
Mupr6679g00002 826 SMART ultradead3 96 307 IPR014001 -
Mupr6679g00002 826 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 90 340 IPR027417 -
Mupr6679g00002 826 ProSiteProfiles Zinc finger CCHC-type profile. 667 680 IPR001878 GO:0003676|GO:0008270
Mupr6679g00002 826 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1-LIKE 92 430 IPR031053 GO:0003678|GO:0006281|GO:0006338
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr6679g00002 Mupr-Chr6679 13860 22298 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr6679g00002 159 413 RAD5 or RAD16-like Gene Family AT5G22750 25.461 5.46e-17 84.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mupr6679g00002 SNF2_N 2e-39 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr6679g00002 K20092 - gmx:100797182 556.599