Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr6609g00001 ATGGAAGCAATGAGAATAGAATTGAGAAGTAAAGAGCGAGTGGCATCAAGAGAACACACCAAGCCTTGTTTCTCGTCCGCATGTGTAGAACCTGGACCCACAACCTCGTACGGCACAGTACTGTCACCATCTGAGACATCAACGACGTGTCTCTCTCCAACAATCCCTCATCGACAACGCATCGTACCTGCTTCCTCCCACCCAATCAAAAATCGACACCGCACTGTACCAAACCCAAACCTCATGGGGAGAGGGAGGGTTCAGCTGAGGCAGATCGAGAACAAAATCAGTCGCCAAGTCACGTTTTCCAAACGGAGAACAGGGTTGCGCAAGAAAGCTCATGAAATCTCTGTGCTGTGTGATGCTCAAGTAGCACTTATTGTGTTCAACGCTAAAGGGAAACTTTTTGAGTATTCATCTGAATCCAGCATGGAAAACGTCCTGGAACGATATGAAAGGCATGCCCATATAGGGCAACTTGTTGATGGTGATGAATCACAGGGGAACTGGTCCTTACAATGCTTCAAGCTCGCGGGCAAAGTTGAAGTCTTGGAAAAAAATTTAAGGAACTTTGGGGGAGAAGGTCTGGATCCCTTGAGCTTGAGAGAGCTTCAGAGTTTGGAGCATCAGCTTGATGCAGCTATAAAGCGCATCCGAACTAAAAAGGCAAAGGAATTGCAAGAGCAAAATAGCATGCTTACAAAGAAGATTAAGGAGAAAGGAAAGGCAGTAGCTGAACGTCCACACTGTGTACCAGAAACCTTAGGTCTAGCATGCCCTCCACAGCTACAACCACAACAAAGACTAGTTCCTACTTTAAACCTTGGTGAAACTTTACAAGAAGCACCGCTGGAGGAAGTGATTGAAGCACGAACAGCTCCTAGCACCACTACTCTCATCCCACCATGGATGCTGCATCATTTTACTAGATGA 933 0.4641 MEAMRIELRSKERVASREHTKPCFSSACVEPGPTTSYGTVLSPSETSTTCLSPTIPHRQRIVPASSHPIKNRHRTVPNPNLMGRGRVQLRQIENKISRQVTFSKRRTGLRKKAHEISVLCDAQVALIVFNAKGKLFEYSSESSMENVLERYERHAHIGQLVDGDESQGNWSLQCFKLAGKVEVLEKNLRNFGGEGLDPLSLRELQSLEHQLDAAIKRIRTKKAKELQEQNSMLTKKIKEKGKAVAERPHCVPETLGLACPPQLQPQQRLVPTLNLGETLQEAPLEEVIEARTAPSTTTLIPPWMLHHFTR 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr6609g00001 310 ProSiteProfiles K-box domain profile. 167 269 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mupr6609g00001 310 ProSiteProfiles MADS-box domain profile. 82 142 IPR002100 GO:0003677|GO:0046983
Mupr6609g00001 310 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 92 138 IPR002100 GO:0003677|GO:0046983
Mupr6609g00001 310 SMART madsneu2 82 141 IPR002100 GO:0003677|GO:0046983
Mupr6609g00001 310 PRINTS MADS domain signature 84 104 IPR002100 GO:0003677|GO:0046983
Mupr6609g00001 310 PRINTS MADS domain signature 119 140 IPR002100 GO:0003677|GO:0046983
Mupr6609g00001 310 PRINTS MADS domain signature 104 119 IPR002100 GO:0003677|GO:0046983
Mupr6609g00001 310 PANTHER SERUM RESPONSE FACTOR HOMOLOG 84 235 - -
Mupr6609g00001 310 SUPERFAMILY SRF-like 83 162 IPR036879 GO:0003677|GO:0046983
Mupr6609g00001 310 Gene3D - 94 165 IPR036879 GO:0003677|GO:0046983
Mupr6609g00001 310 CDD MADS_MEF2_like 83 156 IPR033896 GO:0000977|GO:0045944
Mupr6609g00001 310 FunFam MADS-box transcription factor MADS-MC 94 167 - -
Mupr6609g00001 310 ProSitePatterns MADS-box domain signature. 84 138 IPR002100 GO:0003677|GO:0046983
Mupr6609g00001 310 Pfam K-box region 165 239 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mupr6609g00001 310 Coils Coil 204 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr6609g00001 Mupr-Chr6609 5121 20223 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr6609g00001 82 281 MADS-box Gene Family AT1G26310 50.877 9.07e-65 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mupr6609g00001 K-box 7.4e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr6609g00001 K09264 - gmx:100787971 372.859