Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr6601g00005 ATGGCAAGGATTGCGATTGATGGCAAAAACACATGTTCGGATCAAGTCATTGCAGAAATGGTTGAAATGGGTTTTGAGTATTCCAACATCGTCGAAGCCATAAAAGTAGTGGGCCCATCTATTCCCAGCGCCGTGGAGCACATCCTCAACAACACTACTACCCACACCCCCAAATTGCAAGCACACAACGGCGACGCTCTCAGAAAACAACCTATGCGCGCGTGCCGTCAAGTTCGACAGTCCAGGATACTGGACCATTTCCAGTCCAATGATGTCGAAGAACACAAGGGGGAATTCCCTCATCCCAATCCAATTATGGTTTCGGAGCCATTTGAAGCTCTGGATTTGGATGTTGCGTCTGATTGGGAGCCGAGAGTTAGCAATCTGATGCAAAAGCATTTTGGTTTTTCATCGTTGAAGAGTTTTCAGAAGGAAGCCCTCTCTGCCTGGGTTGCTCATAAAGACTGTCTTGTCCTCGCTGCAACAGGATCTGGGAAATCTCTGTGCTTTCAGATTCCTGCTTTGTTATCTGGGAAAGTGGTGGTTGTGATTTCGCCCTTGATAAGCCTCATGCATGACCAGTGTTTAAAGCTAATGAAACATGGAGTCAGTGCGTGCTTTCTTGGCTCCGGGCAACCTGACGGTACTGTTGAACAGAAAGCAATGAGGGGCATGTATGGCATAGTATACATTTGCCCGGAGACTGTGCTAAGATTGATTGAACCACTGCAAAAGCTTGCAGAGAGTCGCGGTATTGCTTTATTCGCAATTGATGAGGTGCATTGTGTTTCTAAGTGGGGTCATGATTTCCGTCCAGATTACAGACGACTGTCTGTGCTGAGGGAAAATTTCAGTACTAGCAAGCTTAAATCCCTGAAATTTGATATACCTCTGATGGCCTTGACAGCTACAGCTACAAAAAGAGTTAGAGAAGACATTTTAAAATCGTTACACATGTCAAAAGAAACGAATGTTGTTCTTACATCATTTTTTCGTTCTAATTTACACTTCATGATTCACTGTGGCCTCATACAGGTAAAGCATAGTCGAACGTCACAGGCTTCTTATGCAAAAGATTTTCATGAATTGATTCAAGTATATGGTAGAAAGCAAAATATTGATGGAAATGAAAAGGATTTCATCTCAGATGATTCAGATTACATTTCCAATAGCTCCGATGCTAGTAGTATCTCTGATACCGACAGTGTTTCTCCTTATGATGTGGATGACGACCAAGATGATTATGCTTATAGAGATATTGATATAATGCACTCAGGAAACACAGATGAGATTTCGAAGGGAAGAGAATTGTCAATTGAGTTCCTGGAAAATGATATTGATATCTTTCAAAGTGTGGATAACTCAGGCGTTATCCATGGTGAATCTTGTGTACACCCTCCTCGCAAGGAATGGAAATTATCTGAGACATTTGATCCACCTAAGAAACCAGAAGGAAGACTTAAAATTCGTAAAGAGCCTTTGGAACAAGGACCAGCAATCATATATGTACCCACCAGAAAAGCAACTCTGAAAATTGCAAAGTATCTATGCAAGTTTGGTGTGAAAGCTGCTGCTTATAATGCAGGGCTTCCGAAATTGCATCTAAGAAGGGTTCATAAAGAGTTTCATGAAAATACTTTAGAGGTAATTGTTGCTACAGTAGCTTTTGGAATGGGAATTGACAAACCAAATGTCAGAAGAATCATCCATTATGGTTGGCCCCAGAGTTTAGAAGCCTACCACCAAGAAGCTGGACGGGCTGGTCGAGATGGGAAATTAGCAGATTGCATTCTGTATGCAAACCTAGCAAGCAAGCCATCACTTTTGCCTAGTCGGAAAAGTAGAGATCAGATAAAACAAGCGTATATCATGTTATCTGATTGTTTCAGATATGGAATGAATACTTCATGCTGTCGAGCAAAGACACTTGTTGAATACTTTGGAGAGGATTTCAGTCGTCAGAAATGCCTCTTATGTGATGTGTGCATTGATGGCCCACCTCAAAGCAAGAATCTAAAAGAGGAGGCCTGTATTTTACTGCAAACTATAGGTGCCCACAGTGAATGTAGCGGTTCCATGGATTTCTCATACGATGATGATATACATTTTGACTCCAAACATAGAGGACTAAGAGAGAGGCCAAGTCTTAAGATGTTAGTCGGAAAAATAAGGCAGCAGTTTCCAAAGTTTTTAACCACCGATATATTATGGTGGAGAGGTCTTGCTCGAATTTTGGAAGTCAAAGGATACATCAGGGAAGGAGATGACAAGTTTTCCACCATACAATTGCAGACCCATGTTCAGGTAAAATACCCGGAGGCAACAGAATTGGGATTGGAATTTGTGAAGTCCATGAGAGAGCAAGGTTTCTATGTTTACCCCGAGGCAGATATGTTGCTTGCAAGGAAAACTAAGAAACAATTTTCCTCATTCTCGGAATGGAGAAGTGGTTGGGCTGATCCTGAGATCCGTCGCCAGCGCCTTCAAAGAATGCAACACAATAGAAAGTCAAGCATGCAGCCAAGTCCCAAAAAGAAACGAAAAAGAAAACCTAATAAAGTGAAACCTAATATGAGGACTTCTCGTGGGTTCTCGACGTCGCTCTTATTTTGTGTGCCAAACATAAAGACATGGCATAGGAAACAAATGGCTGCAGAAAAACTAAGAATGGTTAGCGAGGCATTGGAAGCGGCAGAAGAAAGAGTGGTGAGATTTGAAGAACGACATGATAGAATTTTGAGTCAAATATGCGCGTCTTACATGACCAATACAGAGCTCATTGAAGCAATTGCGGGTGCTCGAGCAACCATGAACCAGGCATTGGACTTTGCCGTTGATTTGAGGAAAATTCAGTTTAAAATCATTGCTTCTTTCCCTGATGCAATCGATCTTCTGTTGGATACGTCAAAACACGCCGGCGCCCACAAATAG 2931 0.4214 MARIAIDGKNTCSDQVIAEMVEMGFEYSNIVEAIKVVGPSIPSAVEHILNNTTTHTPKLQAHNGDALRKQPMRACRQVRQSRILDHFQSNDVEEHKGEFPHPNPIMVSEPFEALDLDVASDWEPRVSNLMQKHFGFSSLKSFQKEALSAWVAHKDCLVLAATGSGKSLCFQIPALLSGKVVVVISPLISLMHDQCLKLMKHGVSACFLGSGQPDGTVEQKAMRGMYGIVYICPETVLRLIEPLQKLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFSTSKLKSLKFDIPLMALTATATKRVREDILKSLHMSKETNVVLTSFFRSNLHFMIHCGLIQVKHSRTSQASYAKDFHELIQVYGRKQNIDGNEKDFISDDSDYISNSSDASSISDTDSVSPYDVDDDQDDYAYRDIDIMHSGNTDEISKGRELSIEFLENDIDIFQSVDNSGVIHGESCVHPPRKEWKLSETFDPPKKPEGRLKIRKEPLEQGPAIIYVPTRKATLKIAKYLCKFGVKAAAYNAGLPKLHLRRVHKEFHENTLEVIVATVAFGMGIDKPNVRRIIHYGWPQSLEAYHQEAGRAGRDGKLADCILYANLASKPSLLPSRKSRDQIKQAYIMLSDCFRYGMNTSCCRAKTLVEYFGEDFSRQKCLLCDVCIDGPPQSKNLKEEACILLQTIGAHSECSGSMDFSYDDDIHFDSKHRGLRERPSLKMLVGKIRQQFPKFLTTDILWWRGLARILEVKGYIREGDDKFSTIQLQTHVQVKYPEATELGLEFVKSMREQGFYVYPEADMLLARKTKKQFSSFSEWRSGWADPEIRRQRLQRMQHNRKSSMQPSPKKKRKRKPNKVKPNMRTSRGFSTSLLFCVPNIKTWHRKQMAAEKLRMVSEALEAAEERVVRFEERHDRILSQICASYMTNTELIEAIAGARATMNQALDFAVDLRKIQFKIIASFPDAIDLLLDTSKHAGAHK 976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr6601g00005 976 Pfam Helicase conserved C-terminal domain 491 590 IPR001650 -
Mupr6601g00005 976 FunFam ATP-dependent DNA helicase 472 600 - -
Mupr6601g00005 976 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 486 637 IPR001650 -
Mupr6601g00005 976 MobiDBLite consensus disorder prediction 387 403 - -
Mupr6601g00005 976 Gene3D - 110 331 IPR027417 -
Mupr6601g00005 976 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 11 51 IPR015940 -
Mupr6601g00005 976 Pfam RecQ zinc-binding 614 662 IPR032284 -
Mupr6601g00005 976 FunFam ATP-dependent DNA helicase 602 787 - -
Mupr6601g00005 976 CDD DEXHc_RecQ 130 330 - -
Mupr6601g00005 976 SMART ultradead3 135 340 IPR014001 -
Mupr6601g00005 976 SUPERFAMILY UBA-like 12 52 IPR009060 GO:0005515
Mupr6601g00005 976 MobiDBLite consensus disorder prediction 839 856 - -
Mupr6601g00005 976 Pfam DEAD/DEAH box helicase 142 309 IPR011545 GO:0003676|GO:0005524
Mupr6601g00005 976 NCBIfam RecQ family ATP-dependent DNA helicase 129 340 IPR004589 GO:0004386|GO:0006310
Mupr6601g00005 976 Gene3D - 475 600 IPR027417 -
Mupr6601g00005 976 Gene3D - 604 787 IPR036388 -
Mupr6601g00005 976 MobiDBLite consensus disorder prediction 387 410 - -
Mupr6601g00005 976 FunFam ATP-dependent DNA helicase 108 331 - -
Mupr6601g00005 976 PANTHER DNA HELICASE RECQ FAMILY MEMBER 120 846 - -
Mupr6601g00005 976 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 178 602 IPR027417 -
Mupr6601g00005 976 SMART helicmild6 510 591 IPR001650 -
Mupr6601g00005 976 Coils Coil 881 915 - -
Mupr6601g00005 976 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 147 323 IPR014001 -
Mupr6601g00005 976 MobiDBLite consensus disorder prediction 830 860 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr6601g00005 Mupr-Chr6601 37656 45482 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr6601g00005 376 618 Eukaryotic Initiation Factors Gene Family AT5G11170 22.131 9.28e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr6601g00005 K10900 - gmx:100793222 1332.01