LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mupr6601g00001	ATGAATGTTCGACGCCCATTACTTTCAATTGTTTCTCTGTTCCGAAGACCTAAACAAAAGCCAATTACCCGTGACATGCCAATTCATGTGCGCCAAACTCGAACCGCCCTAAACGACGGCGCATTCAAATTTTCGCCACCACCGCGGCACCAATTTCGGGACGATTATTCTCTTCCAAGTTCCAACAGAACACGAGTCGTGATGGCGGCAACGCGCGAAACCGCATCGAACGAAACCATTCGCGAAGAAGAAGAAGAAGCCGAGGACCAAAGTTTCGAAGAGCTCGGCCTGGACGCTCGTCTCCTTCGCGCCTTACTCAAGAAAGGGATAGAGAAACCCACTCCAATTCAGCGCGTCGCGATTCCACTCATTTTGGAAGGTAAGGACGTGGTTGCTCGAGCGAAAACAGGTTCGGGCAAGACCTTCGCGTACCTTCTCCCGTTGCTTCAGAAACTTTTTACCGGTAATGTTGACCGGAAGAAGCTTGCGCCTAATGCTTTTATTCTCGTCCCTACTCGCGAACTGAGTCAACAGGTATATGCGGAAGTGTTATCGCTCGTTGAGTTATGCAGGGTTCAACTGAAAGTTGTGCAGTTGAATAGCAACATGCTCGCTAATGATTTGCGGGCGGCATTGGCTGGACCTCCCGATGTTTTGATCTCCACTCCTGCTTGCATTGCGAAGTGTTTGTCCTGTGGCGTACTTCAGGCAGCATCCATTAATGCATCGCTTGAAACTCTAGTTCTTGATGAGGCAGATCTTCTATTATCATATGGGTATGAAAATGATATAAAAGCTTTTACACCTCATGTACCCAGAAGTTGCCAGTGTCTTCTTATGTCTGCAACATCAAGTGCTGATGTTGACAAACTAAAGAAGTTGATTCTACACAACCCCTTTATTTTGACTCTGCCTGAAGTGGGAAATCATAAGGACGAGGTCATTCCTAAAAATGTTCAGCAATTCTGGATCTCATGTCCTGCCCGTGATAAGTTGCTTTACATCCTTTCTTTATTAAAGTTGGGGTTGGTCCAAAAGAAAGTTCTGATATTCACTAATACCATAGACATGAGTTTCAGATTGAAACTATTCTTGGAAAAGTTTGGGATCAGATCTGCTGTTTTAAATCCTGAGCTGCCTCAGAATTCTCGTCTCCATATTCTTGAGGAATTCAATGCAGGCCTGTTTGATTATCTAATTGCAACAGATATCAGCCAGTCGAAGGAGAAAAATGAAGCACCTAAGGAAAGTAATGTTGGATCACGGAAGTCCAGAAAACATGCTAAAATAAAATTAGATTCTGAATTTGGGGTTGTAAGGGGAGTTGACTTTAAAAATGTGTACACGGTTATAAACTTTGAAATGCCTCAAAGTGTTGAGGGGTATGTACATCGAATTGGACGTACAGGAAGAGCATACAATTCTGGTACTTCTGTTTCTCTGGTTTCTCCGGATGAGATGGATACTTTAGAAGAAATAAGATCTTTTCTTGGGGATGATGAAAACAAAGCCACAAATTCCATTGCTGAGTTTCCTCTCCTCACCAAGAATGCAGTTGAATCTTTACGGTACAGGACTGAGGATGTTGCAAAGAGTGTAACTAAAATTGCTGTCCGAGAATCACGAGCCCAGGATTTAAGGAATGAAATTTTGAACTCTGAAAAGTTGAAAGGCCACTTTGAAACTAATCCAAGAGACCTAGATCTACTGAAGCATGACAAAGTTTTGAGCAAGAATGCCCCGCCTCCGCACCTACGTGATGTGCCTGACTACCTATTAGACAAACCAACGAAAGAGGCAAGGGAAATGGTCAAGCTTGCAAGGGATGCAATGGGAAATAATAATCGCCGCAGGGGATCCAAGAGAAAAATAAGAAAAGATGGAGACCCTCTGAAGGCTATCTCTGCTTTGGCATCAAAAAGACCGCAAAAGGGAAGGAAGACTGGTGCAAGCGATGACAACAATAGCAGTGACAGAAATAAGCGCAAAAAGAAAAATGATATTTTTTATTGA	2013	0.4342	MNVRRPLLSIVSLFRRPKQKPITRDMPIHVRQTRTALNDGAFKFSPPPRHQFRDDYSLPSSNRTRVVMAATRETASNETIREEEEEAEDQSFEELGLDARLLRALLKKGIEKPTPIQRVAIPLILEGKDVVARAKTGSGKTFAYLLPLLQKLFTGNVDRKKLAPNAFILVPTRELSQQVYAEVLSLVELCRVQLKVVQLNSNMLANDLRAALAGPPDVLISTPACIAKCLSCGVLQAASINASLETLVLDEADLLLSYGYENDIKAFTPHVPRSCQCLLMSATSSADVDKLKKLILHNPFILTLPEVGNHKDEVIPKNVQQFWISCPARDKLLYILSLLKLGLVQKKVLIFTNTIDMSFRLKLFLEKFGIRSAVLNPELPQNSRLHILEEFNAGLFDYLIATDISQSKEKNEAPKESNVGSRKSRKHAKIKLDSEFGVVRGVDFKNVYTVINFEMPQSVEGYVHRIGRTGRAYNSGTSVSLVSPDEMDTLEEIRSFLGDDENKATNSIAEFPLLTKNAVESLRYRTEDVAKSVTKIAVRESRAQDLRNEILNSEKLKGHFETNPRDLDLLKHDKVLSKNAPPPHLRDVPDYLLDKPTKEAREMVKLARDAMGNNNRRRGSKRKIRKDGDPLKAISALASKRPQKGRKTGASDDNNSSDRNKRKKKNDIFY	670

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mupr6601g00001	670	Gene3D	-	306	512	IPR027417	-
	Mupr6601g00001	670	CDD	DEADc_DDX56	107	304	-	-
	Mupr6601g00001	670	PANTHER	RNA HELICASE	79	600	-	-
	Mupr6601g00001	670	Pfam	DEAD/DEAH box helicase	114	291	IPR011545	GO:0003676\|GO:0005524
	Mupr6601g00001	670	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	90	118	IPR014014	GO:0003724
	Mupr6601g00001	670	MobiDBLite	consensus disorder prediction	607	670	-	-
	Mupr6601g00001	670	MobiDBLite	consensus disorder prediction	645	670	-	-
	Mupr6601g00001	670	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	337	519	IPR001650	-
	Mupr6601g00001	670	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	121	302	IPR014001	-
	Mupr6601g00001	670	Gene3D	-	59	304	IPR027417	-
	Mupr6601g00001	670	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	314	499	IPR027417	-
	Mupr6601g00001	670	MobiDBLite	consensus disorder prediction	39	58	-	-
	Mupr6601g00001	670	CDD	SF2_C_DEAD	319	482	-	-
	Mupr6601g00001	670	Pfam	Helicase conserved C-terminal domain	330	473	IPR001650	-
	Mupr6601g00001	670	SMART	ultradead3	109	322	IPR014001	-
	Mupr6601g00001	670	Coils	Coil	70	90	-	-
	Mupr6601g00001	670	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	86	303	IPR027417	-
	Mupr6601g00001	670	SMART	helicmild6	359	473	IPR001650	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mupr6601g00001	Mupr-Chr6601	609	9243	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mupr6601g00001	91	513	Eukaryotic Initiation Factors Gene Family	AT3G19760	25.943	3.26e-38	145

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mupr6601g00001	K14810		-	gmx:100800749	1007.67