Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr6598g00006 ATGGATTACACTCCCACTAGTAACTGCAACCCTGCCTCATCCTCAGCCTCTTCTTCCAAGCCAAAGGAGAAAAAGGCTGCCAAGAAATGCAAAGGAGTCAGGCTTTCCACCGACCCACAAAGCGTCGCTGCAAGAGAACGAAGGCATAGAATCAGTGACCGCTTCAAGATCTTGCAGAGCATGGTTCCTGGTGGGAGCAAGATGGACACTGTCTCAATGTTGGAGGAAGCTATTCAGTATGTTAAGTTCCTCAAGACCCAGATTTGGCTTCACCAAACCATGATCAACTTCATCGATGATAACGACTCACACTCACCTTTCTACCTTAATGATTGCAATTTCCCTTCTCAACACTTCTCTTCCCCTCAGCAAAATCCATTGTCTCTTGATTATAACATGCAGAATTTACCGCACCTGCCACTGGCGCAATGCGGCTTCCAAGGAGAAGACACAACGTACTATGATGCCTCTTTCAAATATTGGCCTTAA 489 0.4622 MDYTPTSNCNPASSSASSSKPKEKKAAKKCKGVRLSTDPQSVAARERRHRISDRFKILQSMVPGGSKMDTVSMLEEAIQYVKFLKTQIWLHQTMINFIDDNDSHSPFYLNDCNFPSQHFSSPQQNPLSLDYNMQNLPHLPLAQCGFQGEDTTYYDASFKYWP 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr6598g00006 162 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 10 127 IPR045843 GO:0003700|GO:0006355
Mupr6598g00006 162 FunFam Transcription factor LAX PANICLE 38 101 - -
Mupr6598g00006 162 Gene3D - 36 93 IPR036638 GO:0046983
Mupr6598g00006 162 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 40 94 IPR036638 GO:0046983
Mupr6598g00006 162 MobiDBLite consensus disorder prediction 1 20 - -
Mupr6598g00006 162 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 35 84 IPR011598 GO:0046983
Mupr6598g00006 162 MobiDBLite consensus disorder prediction 1 45 - -
Mupr6598g00006 162 Pfam Helix-loop-helix DNA-binding domain 45 84 IPR011598 GO:0046983
Mupr6598g00006 162 CDD bHLH_AtIND_like 36 95 - -
Mupr6598g00006 162 SMART finulus 41 90 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr6598g00006 Mupr-Chr6598 53266 53754 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr6598g00006 29 88 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 61.667 5.23e-22 89.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mupr6598g00006 HLH 3.9e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr6598g00006 - - pvu:PHAVU_010G073400g 227.639