Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr6564g00001 ATGGAGTTGAAAGAGATTCAGAGACTCGAAGGTCACACCGATAGGGTTTGGAGCTTGGATTGGAACCCGGCCACCGGTCACGCCGGTATCCCACTCGTTTTTGCTTCTTGCAGCGGCGACAAAACCGTTCGAATCTGGGAGCAGAACCTCTCCTCTGGCCTCTGGGCCTGCAAGACGGTTTTGGAAGAAACGCACACGCGAACTGTTCGATCTTGTGCTTGGTCTCCGTCGGGGAAACTGTTGGCCACTGGAAGCTTCGATGCCACCACTGCCATTTGGGAAAACGTTGGTGGCGATTTTGAGTGCGTTTCTACTTTGGAGGGACATGAGAATGAAGTGAAGAGTGTGTGTTGGAACGCATCTGGGACATTGCTTGCAACTTGTAGTAGAGATAAGTCTGTTTGGATATGGGAAGTGCTGCCTGGGAATGAGTTTGAGTGCGTGTCAGTGCTGCAAGGACACGCGCAGGATGTGAAAATGGTGAAGTGGCATCCCACGGAGGATATCTTGTTTTCATGTAGCTATGATAATAATGTTAAGGTTTGGGCTGATGAAGGTGACAGTGACGATTGGCAGTGTGTTCAAACACTTGGGGAACCCAATAACGGTCATACTTCCACTGTTTGGGCCCTTTCATTCAATCCAAGTGGAGACAAAATGGTTACGTGTAGCGATGATCTTACCCTGAAGGTATGGGAAACAGAAAACATAGGGAGACAATCTGATGGTGGATATGCACCTTGGAGACATCTTTGCACTCTTACAGGGTATCATGATCGGACAATTTTCTCAGTTCATTGGTCAAGAGAAGGTATCTTTGCCAGTGGAGCTGCTGATGATGCTATACGGCTTTTTGTGGATGACAACGAAAGTCAGGCTGGTGGTCCTCTGTACAAGTTGCTGCTGAAGAAGGAGAAGGCCCATGACATGGATGTAAATTCTGTCCAGTGGAGCCCTGGGGAGAAGCCGGTACTAGCCTCTGCAAGCGATGATGGGACAATCAAGAACCAGTGA 1014 0.4892 MELKEIQRLEGHTDRVWSLDWNPATGHAGIPLVFASCSGDKTVRIWEQNLSSGLWACKTVLEETHTRTVRSCAWSPSGKLLATGSFDATTAIWENVGGDFECVSTLEGHENEVKSVCWNASGTLLATCSRDKSVWIWEVLPGNEFECVSVLQGHAQDVKMVKWHPTEDILFSCSYDNNVKVWADEGDSDDWQCVQTLGEPNNGHTSTVWALSFNPSGDKMVTCSDDLTLKVWETENIGRQSDGGYAPWRHLCTLTGYHDRTIFSVHWSREGIFASGAADDAIRLFVDDNESQAGGPLYKLLLKKEKAHDMDVNSVQWSPGEKPVLASASDDGTIKNQ 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr6564g00001 337 PANTHER WD40 PROTEIN CIAO1 1 335 IPR028608 GO:0016226|GO:0097361
Mupr6564g00001 337 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 106 139 - -
Mupr6564g00001 337 ProSiteProfiles Trp-Asp (WD) repeats profile. 201 236 IPR001680 GO:0005515
Mupr6564g00001 337 PRINTS G protein beta WD-40 repeat signature 220 234 IPR020472 -
Mupr6564g00001 337 PRINTS G protein beta WD-40 repeat signature 125 139 IPR020472 -
Mupr6564g00001 337 PRINTS G protein beta WD-40 repeat signature 34 48 IPR020472 -
Mupr6564g00001 337 ProSitePatterns Trp-Asp (WD) repeats signature. 125 139 IPR019775 -
Mupr6564g00001 337 ProSitePatterns Trp-Asp (WD) repeats signature. 220 234 IPR019775 -
Mupr6564g00001 337 Pfam WD domain, G-beta repeat 5 46 IPR001680 GO:0005515
Mupr6564g00001 337 Pfam WD domain, G-beta repeat 146 182 IPR001680 GO:0005515
Mupr6564g00001 337 Pfam WD domain, G-beta repeat 191 232 IPR001680 GO:0005515
Mupr6564g00001 337 Pfam WD domain, G-beta repeat 306 335 IPR001680 GO:0005515
Mupr6564g00001 337 Pfam WD domain, G-beta repeat 57 93 IPR001680 GO:0005515
Mupr6564g00001 337 Pfam WD domain, G-beta repeat 101 137 IPR001680 GO:0005515
Mupr6564g00001 337 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 151 182 - -
Mupr6564g00001 337 SUPERFAMILY WD40 repeat-like 3 335 IPR036322 GO:0005515
Mupr6564g00001 337 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 62 94 - -
Mupr6564g00001 337 MobiDBLite consensus disorder prediction 313 337 - -
Mupr6564g00001 337 ProSiteProfiles Trp-Asp (WD) repeats profile. 151 182 IPR001680 GO:0005515
Mupr6564g00001 337 ProSiteProfiles Trp-Asp (WD) repeats profile. 62 94 IPR001680 GO:0005515
Mupr6564g00001 337 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 9 47 - -
Mupr6564g00001 337 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 201 236 - -
Mupr6564g00001 337 FunFam Probable cytosolic iron-sulfur protein assembly protein CIAO1 1 336 - -
Mupr6564g00001 337 SMART WD40_4 298 336 IPR001680 GO:0005515
Mupr6564g00001 337 SMART WD40_4 247 286 IPR001680 GO:0005515
Mupr6564g00001 337 SMART WD40_4 190 233 IPR001680 GO:0005515
Mupr6564g00001 337 SMART WD40_4 144 183 IPR001680 GO:0005515
Mupr6564g00001 337 SMART WD40_4 2 47 IPR001680 GO:0005515
Mupr6564g00001 337 SMART WD40_4 99 138 IPR001680 GO:0005515
Mupr6564g00001 337 SMART WD40_4 54 94 IPR001680 GO:0005515
Mupr6564g00001 337 Gene3D - 31 336 IPR015943 GO:0005515
Mupr6564g00001 337 ProSiteProfiles Trp-Asp (WD) repeats profile. 106 139 IPR001680 GO:0005515
Mupr6564g00001 337 CDD WD40 5 335 - -
Mupr6564g00001 337 ProSiteProfiles Trp-Asp (WD) repeats profile. 9 47 IPR001680 GO:0005515
Mupr6564g00001 337 Hamap Probable cytosolic iron-sulfur protein assembly protein CIAO1 [CIAO1]. 1 337 IPR028608 GO:0016226|GO:0097361
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr6564g00001 77 284 U-box Gene Family AT2G33340 26.442 2.84e-14 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr6564g00001 K24730 - gmx:100778826 671.003