Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr6531g00001 ATGACTAGAAAGAGGATACAGATCAAGAAAATCGATAACATCAGTTCCAGGCAGGTGACTTTCTCCAAGAGAAGGAAAGGGCTTTTCAAGAAGGCTCAGGAGTTGTCAACCCTTTGTGATGCAGACATAGCTCTCATAGTCTTTTCTGCAACTAGCAAGCTCTTTGAGTATGCCAGTTCAAGTATGCAACAAGTAATTGAAAGGCGTGATCGCCATTCAGCAATGCATAGATTGGATCGCCCCACTATTGAGATGCAGATTGAGAGTGATTCCAACGACATCCTGCGAAAGAAAGTAGAAGATAAGAATCGTGAATTGAGGCAATTGAATGGGGAAGATCTGCAAGGATTGACATTACAAGAACTCCAGAAAGTAGAGGAACTTCTTAAAAGAGGTTTGAGCAATGTTTCAAAAGTAAAGGATGAAAAAGTTATGCAAGAGATCAGCACCCTTAAGAGAAAGAATAACTGCAGCCTATTGGAGGAA 486 0.4095 MTRKRIQIKKIDNISSRQVTFSKRRKGLFKKAQELSTLCDADIALIVFSATSKLFEYASSSMQQVIERRDRHSAMHRLDRPTIEMQIESDSNDILRKKVEDKNRELRQLNGEDLQGLTLQELQKVEELLKRGLSNVSKVKDEKVMQEISTLKRKNNCSLLEE 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr6531g00001 162 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Mupr6531g00001 162 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 139 - -
Mupr6531g00001 162 SUPERFAMILY SRF-like 2 82 IPR036879 GO:0003677|GO:0046983
Mupr6531g00001 162 Gene3D - 13 81 IPR036879 GO:0003677|GO:0046983
Mupr6531g00001 162 CDD MADS_MEF2_like 3 77 IPR033896 GO:0000977|GO:0045944
Mupr6531g00001 162 Coils Coil 92 112 - -
Mupr6531g00001 162 Pfam K-box region 93 156 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mupr6531g00001 162 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mupr6531g00001 162 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Mupr6531g00001 162 ProSiteProfiles K-box domain profile. 85 162 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mupr6531g00001 162 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mupr6531g00001 162 FunFam Transcription factor, MADS-box 13 82 - -
Mupr6531g00001 162 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mupr6531g00001 162 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mupr6531g00001 162 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr6531g00001 Mupr-Chr6531 15594 22188 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr6531g00001 1 155 MADS-box Gene Family AT2G22540 53.503 2.17e-55 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mupr6531g00001 K-box 4.2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr6531g00001 - - aprc:113860188 267.314