Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr6522g00004 ATGGTGAAACCAACATGTCTAACCCACATATCCTGGTTTGTGGGAGCAAGGTTGGGATTATTCTCTCACAGACAGTTCCCACTTGATTGGAGACTCCTGTCCACCACTTCCACTCCATATCCTCTCCAGTACGAACTCATAATCAACCGTCCATCACACCCACCACCTGTTCGATCCATTAACTCCCCTTCCCAGACCTCCCCCGAGCCCGATGACCCCGCCCTCGACAAGGCCCAGAGGAAGTACTACAACAAACGCCGCAAGAGGATGTACGGCTCCGATTCCGATGAAGACGCTGACAACGCGCGACGCGGCGAAGAGCTCGTGGAGTTGAAGCCCCAGGTGGTCGAGTTTCCCACGCTGCACAAGAGAGAGGAAGAGTTGTATTTCTACGACGCGTTTACGTATCCATGGGAGAAGGAGAAGCATTACAAGATGGTTTATCAGTTGGAGAAGAAGTACTTTCCTGATCAATCCCTTGACAAGGCCTTCCTCCAACCGGGACAATCAAATTCAAATGGGAAGGGCAAGGGTACCAAGAAAGTTGCTGCTGCTGCTGCTGATGATGCTGATGCTGATGATGAGAAGTTGCTGTTTTTTGAGGGGAAAGACAAGGGTGAGGAGGGTAGAACTGGAAGTAGAGATCTTACGGAGAAGAAGGTTGAGGAGTTCTTTAAGGGTTTGAAGAAGGTTCCTGATAACAAGGATGTTCAACTTGGACAGCCTTTTCTTGCCTCAAGGAGGACCGGTCTTCCTCCCGTGTGGGATAGTCCGCATGGTACTGTGGTTTTGGTCAACAAACCAAAAGGTTGGACTTCATTCACAGTTTGTGGAAAGCTGCGTCGCCTTGTCAAAGTGAAAAAGGTAGGTCATGCTGGGACTCTTGACCCAATGGCTACTGGTTTATTGATTGTTTGTGTTGGTAAAGCAACAAAATTGGTAGACAGATATCAAGGGATGGTTAAGGGTTATAGTGGGGTTTTCCGCATGGGGGAGGCTACTTCTACATGGGATGCTGATTCACCAGTCATTCAACGTGAGCCATGGGAGCACATCAAAGATGAGGATATAAAGAGAAATGCTTTGTCTTTTTGTGGGGAGATTTGGCAAGTTCCTCCTATGTTCTCAGCTATTAAAGTTGGAGGTGAAAAGATGTATGAAAAAGCAAGGAGGGGAGAAAGCATTGAACTTTCACCTAGACGAATTTCAATTTTCCAGTTTGACATAGAGCGTAGCTTGGATGACAGACAGAATTTGATTTTTAGAGTGACATGTTCCAAAGGGACATATATTCGGTCACTCTGTGCAGATTTTGGGAAGGCTCTTGGCAGCTGTGCCCATTTAACTGCTCTCCGAAGAGATTCAATTGACTTCATTATTGACTTATCAGTTAGCTCAACACTTGTGTTGCACGATTCAAAACATAGAAACGAAGTGTCCATCGGTAAGAAAGCAATTCTTCCATATGAGGACATAGTTCTTCATCTTGATCGTTCGGATCTTGATTTGGAGATTCTTGGAAGAAGAGAAATTATATTCATTGCATTGTTGACATATTGA 1560 0.4571 MVKPTCLTHISWFVGARLGLFSHRQFPLDWRLLSTTSTPYPLQYELIINRPSHPPPVRSINSPSQTSPEPDDPALDKAQRKYYNKRRKRMYGSDSDEDADNARRGEELVELKPQVVEFPTLHKREEELYFYDAFTYPWEKEKHYKMVYQLEKKYFPDQSLDKAFLQPGQSNSNGKGKGTKKVAAAAADDADADDEKLLFFEGKDKGEEGRTGSRDLTEKKVEEFFKGLKKVPDNKDVQLGQPFLASRRTGLPPVWDSPHGTVVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMVKGYSGVFRMGEATSTWDADSPVIQREPWEHIKDEDIKRNALSFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIFQFDIERSLDDRQNLIFRVTCSKGTYIRSLCADFGKALGSCAHLTALRRDSIDFIIDLSVSSTLVLHDSKHRNEVSIGKKAILPYEDIVLHLDRSDLDLEILGRREIIFIALLTY 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr6522g00004 519 Hamap tRNA pseudouridine synthase B [truB]. 259 519 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Mupr6522g00004 519 NCBIfam tRNA pseudouridine(55) synthase TruB 261 456 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Mupr6522g00004 519 MobiDBLite consensus disorder prediction 88 105 - -
Mupr6522g00004 519 SUPERFAMILY Pseudouridine synthase 261 458 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Mupr6522g00004 519 FunFam tRNA pseudouridine synthase B 256 475 - -
Mupr6522g00004 519 Pfam TruB family pseudouridylate synthase (N terminal domain) 281 431 IPR002501 GO:0006396
Mupr6522g00004 519 PANTHER TRNA-PSEUDOURIDINE SYNTHASE 153 457 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Mupr6522g00004 519 MobiDBLite consensus disorder prediction 53 77 - -
Mupr6522g00004 519 CDD PseudoU_synth_EcTruB 262 453 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Mupr6522g00004 519 Gene3D Pseudouridine synthase 256 494 - -
Mupr6522g00004 519 MobiDBLite consensus disorder prediction 86 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr6522g00004 Mupr-Chr6522 5724 12751 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr6522g00004 262 453 NAC Transcription Factor Family AT3G57150 33.333 4.54e-20 91.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr6522g00004 K03177 - gmx:100793939 664.455