Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr6493g00001 ATGGCCACCAATAACGAAGCATATGCACTCAAGGAAAAGTTGCGGGAATTGGTCAATACTATCTTGGACTCTGATGACTACACCGTCAACGTTGCCGACGACGCCATTCTTGCTCTTTCTGCTCTCAGGGATATGAAATACAACTCTTCTCTCTCACGCAAGTTCCACGATATACCTGTTCCTCCACACTTTAAGTGTCCTCTCTCTGGTCACTTGATGATAGAACCTGTTATCTTGGCCACTGAGCAGACATTTGATAGGGCATTCATTGAGAGGTGGCTGAACGAGGTTCATAGAATTTGCCCTCAGACGAAACAAGTCCTCTCTCACGCCATCCTGACACCTAATTGCTTGGTCCATGGCATGATTACCAAGTGGTGTAAAGAGCACGGAGTTGAGCTACCGAAGCCTGTTTGGGACATTTACGACGAGCAAGTAACGGACGCACACAGACAGCGTTTGCGTTCCTTGCTTTACAAGCTCTCACTGTCGCTATCCGAACAGAAAGAAGCCGCAAAAGAGCTTCGGCACTTAGCAAAGCGAATGCCTGCGTTTCGAACGCTGTTTAGGAACACAGAAGTGCTTCATCTACTGGTGAGTCCGTTATTGGGCGGCACGGCTAGCGTGGACCCCGAGCTCCACGAGGACTTGATCACAACGCTTCTGAATCTGTCGATTAACGAGGACAACAAGAAGGTGTTTGGAGAGAACGAAGAGGTACTTTCCCTGCTTATTGATTCTTTGAAATCAGGAAACCTTAATAGTCGAGGCAATGCAGCTGCAACAATATTCTCACTCTCGGCAATTGATTCAAACAAAGAGGTAATTGGAAAATCTGGAGCTATAAAATACTTAGTGGATTTATTAGAGGAGGGACATCCTTCGGTGACGAAGGATGCTGCTTCAGCATTGTTCAAACTATGCTGTGTGCATGAAAATAAAGGTAGGACCGTGCGAGAAGGGGCTGTGCAGGTTATTCTGAATAAGATCATTGGGCACTTTCTTGTGGATGAGTTGTTGGCACTATTGGCACTCCTCTCTACACATTCCAAGGCGATTGAAGCATTAGTCAGTCATGGTGCTGTTCCCTTTTTGTTCGACATCTTAAGGGAAAACGCGTCAGAACGCGTCGACGAAAACTGTGTTGCCATTCTATGTACAATCTGTTTCAATGATAGAGACAAACGGAATGAAATTAGAGAGGATGAAATGACCAACCACACACTCTATAATCTTACGCGAACCGGCTCTTCCAGGGCCAAAAGGAAAGCCAACGCTATTCTTGAAAGGATCTCCATACCTCAATCCTCAACGCCAAACAAT 1323 0.4596 MATNNEAYALKEKLRELVNTILDSDDYTVNVADDAILALSALRDMKYNSSLSRKFHDIPVPPHFKCPLSGHLMIEPVILATEQTFDRAFIERWLNEVHRICPQTKQVLSHAILTPNCLVHGMITKWCKEHGVELPKPVWDIYDEQVTDAHRQRLRSLLYKLSLSLSEQKEAAKELRHLAKRMPAFRTLFRNTEVLHLLVSPLLGGTASVDPELHEDLITTLLNLSINEDNKKVFGENEEVLSLLIDSLKSGNLNSRGNAAATIFSLSAIDSNKEVIGKSGAIKYLVDLLEEGHPSVTKDAASALFKLCCVHENKGRTVREGAVQVILNKIIGHFLVDELLALLALLSTHSKAIEALVSHGAVPFLFDILRENASERVDENCVAILCTICFNDRDKRNEIREDEMTNHTLYNLTRTGSSRAKRKANAILERISIPQSSTPNN 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr6493g00001 441 PANTHER U BOX DOMAIN-CONTAINING 6 429 - -
Mupr6493g00001 441 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 58 133 IPR013083 -
Mupr6493g00001 441 SUPERFAMILY RING/U-box 55 137 - -
Mupr6493g00001 441 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 280 322 IPR000225 GO:0005515
Mupr6493g00001 441 Gene3D - 161 333 IPR011989 -
Mupr6493g00001 441 Gene3D - 335 433 IPR011989 -
Mupr6493g00001 441 SMART Ubox_2 63 126 IPR003613 GO:0004842|GO:0016567
Mupr6493g00001 441 CDD RING-Ubox_PUB 61 113 IPR045210 -
Mupr6493g00001 441 SMART arm_5 349 390 IPR000225 GO:0005515
Mupr6493g00001 441 SMART arm_5 269 309 IPR000225 GO:0005515
Mupr6493g00001 441 Pfam Armadillo/beta-catenin-like repeat 272 308 IPR000225 GO:0005515
Mupr6493g00001 441 SUPERFAMILY ARM repeat 164 432 IPR016024 -
Mupr6493g00001 441 Pfam U-box domain 60 130 IPR003613 GO:0004842|GO:0016567
Mupr6493g00001 441 ProSiteProfiles U-box domain profile. 59 133 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr6493g00001 Mupr-Chr6493 3934 5736 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr6493g00001 122 431 U-box Gene Family AT3G07360 51.266 5.33e-94 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr6493g00001 - - gmx:100806132 588.186