Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr6487g00001 ATGGCGACAACGTCCGTGGTGCCGGCGAACCGGCGGCGAGCGGTCAACGCGACAGAGGAGATGGACTTTGAGACGACGGAGGGCGTGAAGGCGATCGCGAGCTTCGAGGAAATGGGGATTAAGGACGATCTGCTCCGAGGAATCTACCAATACGGCTTCGAGAAGCCCTCCGCCATTCAGCAACGGGCCCTCACGCCCATCATCCAGGGCCGTGACGTCATCGCTCAGGCCCAATCTGGAACCGGCAAAACGTCCATGATTGCCCTCACCGTTTGCCAGGTCGTCGATACCTCCATCAGAGAGGTCCAGGTGTTAATAGTGTCACCAACGAGGGAACTGGCCTCACAGACTGAGAAGGTTATATTGGCTATTGGGGATTTCATTAATATACAAGCTCATGCTTGCATTGGAGGTAAAAGTGTGGGAGAAGATATAAGGAAACTTGAGTATGGAGTTCATGTGGTGTCTGGAACTCCTGGTCGAGTCTGTGACATGATCAAAAGGAGAACATTGCGCACGAGAGCCATCAAAATGCTGGACGAATCTGATGAAATGTTGAGCAGAGGGTTTAAAGATCAAATTTATGATGTGTACAGATATCTCCCACCTGACCTTCAGGTTGTCTTGATTTCTGCTACCCTTCCTCATGAAATACTGGAGATGACAAATAAGTTCATGACTGATCCTGTAAGGATCCTTGTAAAACGTGATGAATTGACATTGGAGGGCATCAAACAATTTTTTGTTGCGGTTGAAAGGGAGGAATGGAAGTTTGATACCCTGTGCGATCTTTATGATACTCTCACTATCACTCAAGCTGTTATATTCTGTAACACTAAGCGAAAGGTGGACTGGTTAACTGAAAAAATGCGTAACAATAATTTCACTGTCTCATCAATGCATGGTGACATGCCTCAGAAAGAAAGAGATGCTATTATGGGAGAATTTCGTGCTGGAACAACCCGTGTACTAATAACAACTGATGTTTGGGCCCGTGGTCTTGATGTTTCCCTAGTTATCAATTATGACCTTCCAAATAATCGAGAGCTTTACATTCATCGAATTGGCCGCTCTGGACGTTTTGGACGAAAGGGTGTTGCAATAAATTTTGTGAAGAGCGATGACATCAAGATCTTGAGAGATATTGAACAGTATTACAGTACCCAGATCGATGAAATGCCAATGAATGTTGCTGATCTTATATAA 1206 0.4561 MATTSVVPANRRRAVNATEEMDFETTEGVKAIASFEEMGIKDDLLRGIYQYGFEKPSAIQQRALTPIIQGRDVIAQAQSGTGKTSMIALTVCQVVDTSIREVQVLIVSPTRELASQTEKVILAIGDFINIQAHACIGGKSVGEDIRKLEYGVHVVSGTPGRVCDMIKRRTLRTRAIKMLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTNKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRNNNFTVSSMHGDMPQKERDAIMGEFRAGTTRVLITTDVWARGLDVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr6487g00001 401 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 30 384 - -
Mupr6487g00001 401 Pfam DEAD/DEAH box helicase 58 218 IPR011545 GO:0003676|GO:0005524
Mupr6487g00001 401 CDD DEADc_EIF4AIII_DDX48 35 233 - -
Mupr6487g00001 401 Gene3D - 23 239 IPR027417 -
Mupr6487g00001 401 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 243 401 IPR001650 -
Mupr6487g00001 401 SMART helicmild6 284 362 IPR001650 -
Mupr6487g00001 401 SMART ultradead3 52 247 IPR014001 -
Mupr6487g00001 401 Pfam Helicase conserved C-terminal domain 257 362 IPR001650 -
Mupr6487g00001 401 FunFam ATP-dependent RNA helicase DBP5 11 237 - -
Mupr6487g00001 401 CDD SF2_C_DEAD 244 371 - -
Mupr6487g00001 401 Gene3D - 240 401 IPR027417 -
Mupr6487g00001 401 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 64 232 IPR014001 -
Mupr6487g00001 401 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 101 384 IPR027417 -
Mupr6487g00001 401 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 33 61 IPR014014 GO:0003724
Mupr6487g00001 401 FunFam Eukaryotic initiation factor 4A-III 238 401 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr6487g00001 Mupr-Chr6487 4204 8123 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr6487g00001 23 401 Eukaryotic Initiation Factors Gene Family AT3G19760 87.500 0.0 703
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr6487g00001 K13025 - gmx:100795032 768.459