Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr6479g00003 ATGGGTTTGGAACATCAACACCAAAAGGGCATGGAGGGTAGATTCTGTGAGAAAGTCAAGATGAAGAAGAATAAGTCCAAGTTTGTTGGGGTGAGACAAAGGGCTTCTGGGAAATGGGCAGCAGAGATCAAAGACACATCAAAGAAGATTAGGCTTTGGCTTGGCACTTATCAAACTCCTGAGGAAGCTGCTCGAGCTTATGATGAAGCTGCTTGCCTCCTTCGAGGTTCAAACACTCGCACTAACTTCTCCACTCATGGCTATGCCATTGCTACAAATTCTCCTATATCTCTCAAACTCAGAAACCTCCTTCATCGTAAAGCCACGTCAAATCAAATTCAAATTCAAGGTACTTCTACTGCACCTAGTCCAAATGCTACTTCCATCGATAGCATCATGGTCATGGAAGACAAGTTAGACAACTCTGTGTGTAGTAGTGAAGGTAAGTCATTGTTTGTGGTTCAGAACCAAGTTTCTGATAATCTGTATGGTCTAGATATCAATATGATCAACTGTTCAATGGGTATCACTCCAAATATATCGCAGTTTGATTATTCTTGGCCGCTAGCCCAACAAAGGATCAACGAATTACCAATACCAAAAGATGGTTTGAGTGTAGAAAGGCAATTGTCAGACTTGGTATATGCCACGGATGAGTGCCACGTGGAGGATACATATGAATATGATGGCTCGGTTAAAATGCTTCGAGTTCATGCTGATGGCTCCCTCAATTCCATACTCGGAACTTGTTATTTGGAACATCCAGCAGGTCCTTTTTCCAGTTAG 786 0.4237 MGLEHQHQKGMEGRFCEKVKMKKNKSKFVGVRQRASGKWAAEIKDTSKKIRLWLGTYQTPEEAARAYDEAACLLRGSNTRTNFSTHGYAIATNSPISLKLRNLLHRKATSNQIQIQGTSTAPSPNATSIDSIMVMEDKLDNSVCSSEGKSLFVVQNQVSDNLYGLDINMINCSMGITPNISQFDYSWPLAQQRINELPIPKDGLSVERQLSDLVYATDECHVEDTYEYDGSVKMLRVHADGSLNSILGTCYLEHPAGPFSS 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr6479g00003 261 SUPERFAMILY DNA-binding domain 26 84 IPR016177 GO:0003677
Mupr6479g00003 261 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 22 127 - -
Mupr6479g00003 261 Gene3D AP2/ERF domain 26 86 IPR036955 GO:0003700|GO:0006355
Mupr6479g00003 261 SMART rav1_2 27 90 IPR001471 GO:0003700|GO:0006355
Mupr6479g00003 261 PRINTS Ethylene responsive element binding protein signature 50 66 IPR001471 GO:0003700|GO:0006355
Mupr6479g00003 261 PRINTS Ethylene responsive element binding protein signature 28 39 IPR001471 GO:0003700|GO:0006355
Mupr6479g00003 261 CDD AP2 28 83 IPR001471 GO:0003700|GO:0006355
Mupr6479g00003 261 ProSiteProfiles AP2/ERF domain profile. 27 84 IPR001471 GO:0003700|GO:0006355
Mupr6479g00003 261 Pfam AP2 domain 26 76 IPR001471 GO:0003700|GO:0006355
Mupr6479g00003 261 FunFam ethylene-responsive transcription factor RAP2-11 26 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr6479g00003 Mupr-Chr6479 15572 17565 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr6479g00003 18 219 AP2-EREBP Transcription Factor Family AT5G19790 44.118 1.33e-40 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Mupr6479g00003 AP2 4.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr6479g00003 K09286 - gmx:100809046 331.643