LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mupr6475g00001	ATGGAAGGAAAAAGTGATAAGGGGTTGTTGGAATGTGGAAGGAAGTGCACTCCACCACCGTTTTTGTTGAAAACTTATATGCTGGTGGAGGATCCCGCCACCGACGACGTCGTTTCGTGGAATGCTGAAGGGACGGCGTTCGTTGTGTGGCAGCCGGCGGAGTTTGCTCGTGATCTCCTCCCAACACTCTTCAAACACAGCAATTTCTCTAGCTTTGTGCGCCAGCTCAATACCTACGGCTTTCGTAAAGTTGCAACAAGCAGATGGGAGTTTTTCAATGACAGGTTCAGGAAAGGTGAAAGAGATTTGCTACATGAGATTCGGCGAAGAAAAGCTTGGACCAGTAAGCAACATCCAAATGTACCAAACCAAGCCACACCCCAAGATTCTGATGAAGATCAAAGGTCCTCATCAACCTCATCATCTTCTGGTTACACTACTCTTGTGGATGAAAATAAGCGACTTAAGAAGGAGAATGGGGTGTTGAACTCTGAGCTCACAGGCATGAAAAGGAAGTGTAGGGAACTGCTTGATTTGGTTGCCAAATATTCATCACAAGCAAAGGAGAAGGAAGAAGATGAAAGGCCAATGCTGTTTGGAGTGAGACTAGATGTTCAAGGAGGGAGGGAGATCAAGAGGAATAGAGCTGAGATAACTAGGCTTGCAAAGAGTGTTTTCCTTGATCCTAGTGCGTCAAGGAACAAACTAAGATGCCTCAAGCATATG	726	0.4587	MEGKSDKGLLECGRKCTPPPFLLKTYMLVEDPATDDVVSWNAEGTAFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSRWEFFNDRFRKGERDLLHEIRRRKAWTSKQHPNVPNQATPQDSDEDQRSSSTSSSSGYTTLVDENKRLKKENGVLNSELTGMKRKCRELLDLVAKYSSQAKEKEEDERPMLFGVRLDVQGGREIKRNRAEITRLAKSVFLDPSASRNKLRCLKHM	242

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mupr6475g00001	242	SUPERFAMILY	"Winged helix" DNA-binding domain	17	110	IPR036390	-
	Mupr6475g00001	242	PRINTS	Heat shock factor (HSF) domain signature	21	44	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Mupr6475g00001	242	PRINTS	Heat shock factor (HSF) domain signature	72	84	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Mupr6475g00001	242	PRINTS	Heat shock factor (HSF) domain signature	59	71	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Mupr6475g00001	242	SMART	hsfneu3	17	110	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Mupr6475g00001	242	Pfam	HSF-type DNA-binding	21	110	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Mupr6475g00001	242	MobiDBLite	consensus disorder prediction	116	148	-	-
	Mupr6475g00001	242	ProSitePatterns	HSF-type DNA-binding domain signature.	60	84	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Mupr6475g00001	242	MobiDBLite	consensus disorder prediction	113	148	-	-
	Mupr6475g00001	242	Gene3D	-	13	111	IPR036388	-
	Mupr6475g00001	242	FunFam	Heat stress transcription factor B-4	13	111	-	-
	Mupr6475g00001	242	Coils	Coil	152	193	-	-
	Mupr6475g00001	242	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	17	182	IPR027725	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mupr6475g00001	Mupr-Chr6475	5588	9303	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mupr6475g00001	18	204	HSF	AT2G41690	56.039	3.20e-71	216

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Mupr6475g00001		HSF_DNA-bind	2.7e-31	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mupr6475g00001	K09419		-	gmx:100802739	383.645