Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mupr6472g00001 | ATGGACACTATGTTTCCATGCCATTTTTTCATATGGGAATGTGGCACATATCGGAATCCTAAGCATGATATTCAACAAGCTCTCTTCGAAAGGTTTTTCCTTCCAGAAAGGAATTATATGTCTTTCTCACTTGTTTATAAAAGAAATATATCTCTTTCTCACTTGTTTACAATAACAAGTTTCTGCTTTTGTGAAGTCAGGGACTGTGAGCTGCATATACTTATTTCCAAGCCTATATTTGACTACATTCAGAATGCTACAACACTAAAGTTAACTTTGGGCAATGTTTCTGTTAAGTATTTCATTGATTCAATTTCTAACAAGTCTTCATTATATTTTGCAAGCTCATATATGGTGTTAGAATGTGCAAACATGCACTCAAGACTAAGTGTTGGAGATGGTTTTCAATTAAGTGCCTCAACTGCACCTAAAAATTCTAGTGTTGGGTATGAATTAGATGAATTAGATTCATTTCAAGATATTTACATATGGGGAGAGGTTTTAACAAATGGGGTTTCACATGATCGGATTGGAACTTTAATCCCTTCTAAGACAGATATATTGATTCCTAAGCCTATAGAGTCAAATGCTGTTTTCGATGTTCATCATTTTGCAACTGGTGCACACCATATTGCTATAGTAACTAGGCAAGGACAAGTTTTTACTTGGGGAGAAGAATCAGGAGGGAGACTTGGTCATGGAACTGATAAAGATTTTGGTCATCCCATTCTAGTTGAGTTTCTTGAAGGTACTTGTTTGGACTTTGTTACATGTGGAGAGTATCATACAGGTGCTATATCTAAATCTTATGAACTTTATATGTGGGGTGATGGAACACATAATGTTGGACTTCTTGGACAGGGTTCTGATGCTAGTCATTGGATACCAAAAATAGTTAATGGCCCTTTGGAAGGACTTCATGTTGTGTCTGTTGCATGTGGCACATGGCATTCAGCATTGACAACCTCAACTGGACAACTTTTTACCTTTGGTGATGGTGCATTTGGTGTCTTAGGCCATGGAGATCAAGAAAGTGTGTGGTACCCAAAGGAGGTAGAACTATTAAGCGGACTAAAGACTATAAAGGTTGCATGTGGAGTTTGGCACACAGCAGCTATTATAGAGGTTGCGTTTCAATCTAGTTCAAATACTCCATCATGGAAGCTCTTCACATGGGGTGATGGTGACAAATATCGTTTGGGTCATGGAAACAAGGAAACATACCTTCAACCTACTCGTGTCACTTCACTTATAGAATATAATTTCCACCAAGTAGCATGTGGGCACACAATGACTATTGCTCTCACTACATCCGGTCATGTCTTTACCATGGGAGACAGAGAAAATGGTCAATTAGGAAATCCGATGTCAATTGGAAAAATACCTACTCTAGTTCAAGATAAGTTACTGGGAGAGTTTGTTGAGGAAATATCATGTGGAGCACGTCATGTTGCTATCTTGACAAAAAAAAGTGAATTGTATACATGGGGAATGGGTGCCAATGGAAGATTGGGACATGGAGATATAGAAGATAGAAAATCTCCTACATTAGTGGTAGCCTTAAAAGATAGAAATATAAAACATATTTCATGTGGCTTTAATTTTACATCATGTACATGTATCCATAAATGGATCTCTGGAACTGATCAATCTATTTGCTTTGGTTGTCGACAAGTATTTGGTTTAACAAGGAAAAGGCATAATTGCCATAATTGTGGATTGCTCTTCTGTCATGCTTGTAGTTCCAAAAAGACATTGAAAGCAGCATTGACTCCAACACCAGAAAAACTTCATCGTGTGTGTGATAATTGTTATGTTAAGCTTAAAGTTGTTGATGATGGTGCTTCCAAGTTGGATAGAAAAGCTACCCCTTCTCATTATTCCATAAATGGAAATGAAAGATCAGGGCAAGGAGCAACAAAGTCTACAAGAACACTATTGTCTCCCATCACTGAACCAGTGAAATATCTCGAAATAAAGAATAGAAATCCTGGAAGAAATGATGATTCTACTTCGTTTGTCCGGTCTTCTCAAGTTCCATCTCTTGTGCAGTTGAAAGATATTGCATTTCCAAGTTCACTTAGTTCTTCTCAAAGTGTTATAAGGACTATTACACCTCTCAGTCCATCACAAACTCTACCACTACCTACCAATTCAACACCCTTATCCACACACATAAGAAGACAAAGTCCTCCACGTACTGCCAGTCCTAGATTTTTTGGAACTCTTAACAATAGTTTAAGAAGAAAAAATGACCTATTGAATCAAGAAGTTTCAAAGTTACAGAAACAAATTCAAAGTTTGAAGCAAAGAAGTGACATGCAAGAGGTGGAAATTAAGAAGCTTAACAAAAAGGCTATGGAAGCTACTGCCTTAGCTGCAGTAGAATATTCTAATCATAGAGTAACAAAAGAATTTGTCGAATCTACTATACATCAGTTGAAGGAAATTACCAAGAAGCTTCCACAAGAGATCCCAGAAAGTGAAAATTTGATAACTGTGCTTACTCGAGCTGAAGATTTTCTCGAAGAAACTTTAGAATCTGAAACATCTTCACCATCAAAATTGGAGTCTAAGCAACAAAATGCACTTGATACACCTACCTTGGATGGTGGCTTTTCCAAATTACAAAAAAACAAACTTAAAAGGAATGTGGATGTTATAAGAGTTAGACCTTGTCAAGATGAAGAAAAAATCCTTCAAGAAAGTAATAAATCAAAGTTAGAGCCTAAGCAACAAAATGCACCTAATATACCTACCTTAGGTAGTAACTCTTCCAAACTAAAAAAAAGTAAAGTTGAAGAAAATGTAGATGTTGCAAGAGTCGATCCTTGTCAAGATGAAGGAAATTTCCTTGAAGAAAGTAATAAATTAAAGTTAGAGCCTAAACAACAAAATGCACCTGATATATCTACCTCAGACAATGATTCTTCCAAATTACAAAAGAAAATACTAGAAGAAAATGTGAATGCTACTACATATGAGGATGAAGAAGCTTTTGTTGAAGAAAGTAATAAATCAAAGTTGGAGTCTAGACAACAAAAGTCACCTAATATACCTACTTCAGATACTAGGACTTCCAAAATGCAAGACCATGAACTAGAAAAAAATGTTAATTCCATAGAAGTTGACCTTTATCAAGTTAGAGAAAATTTGCTTGAAAAAAGTAATGGACCAAAATTGGAGATTGAGTGCAAAAATGAACCTAATATGTTTGCCTCAATTCATGATGTTTCTAAATTACTAGAGGATAGGCTAGAGGATAATGATAAGGCTGGAGGAGTTTATCAATCTCAGGTAAAAGGTCATATCCTTCAAGAATGTCATGGGTCATCTATATCTAGTGTTGGGGCAACAAACTCTTCACAAAACTCAAAGAATGATTCAAAACCATTGGACTCTTCAAGAATTGGGAAGCAAGGAGAAATACAAGTTATTGAAAAATTTGAACATGGTGTTTATGTGGCACTCATGTTACGATCTGATGGTATCAAAATGTTTAAACAGGTGAAATTTAGTAAACGAAGATTCACCGCAAATCAAGCAGAAGAATGGTGGAACCAAAACAAAGGTAGGGTTCTTAGGTATTATTGTCCAACACATCAAAAACTAACAATTAGACCATCTAGCGCTACATCACATGTTACTGAAATGATTGAGGCATCTCCTTCTTAA | 3675 | 0.3605 | MDTMFPCHFFIWECGTYRNPKHDIQQALFERFFLPERNYMSFSLVYKRNISLSHLFTITSFCFCEVRDCELHILISKPIFDYIQNATTLKLTLGNVSVKYFIDSISNKSSLYFASSYMVLECANMHSRLSVGDGFQLSASTAPKNSSVGYELDELDSFQDIYIWGEVLTNGVSHDRIGTLIPSKTDILIPKPIESNAVFDVHHFATGAHHIAIVTRQGQVFTWGEESGGRLGHGTDKDFGHPILVEFLEGTCLDFVTCGEYHTGAISKSYELYMWGDGTHNVGLLGQGSDASHWIPKIVNGPLEGLHVVSVACGTWHSALTTSTGQLFTFGDGAFGVLGHGDQESVWYPKEVELLSGLKTIKVACGVWHTAAIIEVAFQSSSNTPSWKLFTWGDGDKYRLGHGNKETYLQPTRVTSLIEYNFHQVACGHTMTIALTTSGHVFTMGDRENGQLGNPMSIGKIPTLVQDKLLGEFVEEISCGARHVAILTKKSELYTWGMGANGRLGHGDIEDRKSPTLVVALKDRNIKHISCGFNFTSCTCIHKWISGTDQSICFGCRQVFGLTRKRHNCHNCGLLFCHACSSKKTLKAALTPTPEKLHRVCDNCYVKLKVVDDGASKLDRKATPSHYSINGNERSGQGATKSTRTLLSPITEPVKYLEIKNRNPGRNDDSTSFVRSSQVPSLVQLKDIAFPSSLSSSQSVIRTITPLSPSQTLPLPTNSTPLSTHIRRQSPPRTASPRFFGTLNNSLRRKNDLLNQEVSKLQKQIQSLKQRSDMQEVEIKKLNKKAMEATALAAVEYSNHRVTKEFVESTIHQLKEITKKLPQEIPESENLITVLTRAEDFLEETLESETSSPSKLESKQQNALDTPTLDGGFSKLQKNKLKRNVDVIRVRPCQDEEKILQESNKSKLEPKQQNAPNIPTLGSNSSKLKKSKVEENVDVARVDPCQDEGNFLEESNKLKLEPKQQNAPDISTSDNDSSKLQKKILEENVNATTYEDEEAFVEESNKSKLESRQQKSPNIPTSDTRTSKMQDHELEKNVNSIEVDLYQVRENLLEKSNGPKLEIECKNEPNMFASIHDVSKLLEDRLEDNDKAGGVYQSQVKGHILQECHGSSISSVGATNSSQNSKNDSKPLDSSRIGKQGEIQVIEKFEHGVYVALMLRSDGIKMFKQVKFSKRRFTANQAEEWWNQNKGRVLRYYCPTHQKLTIRPSSATSHVTEMIEASPS | 1224 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mupr6472g00001 | 1224 | MobiDBLite | consensus disorder prediction | 711 | 736 | - | - | |
| Mupr6472g00001 | 1224 | MobiDBLite | consensus disorder prediction | 1115 | 1131 | - | - | |
| Mupr6472g00001 | 1224 | MobiDBLite | consensus disorder prediction | 928 | 960 | - | - | |
| Mupr6472g00001 | 1224 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 387 | 438 | IPR000408 | - | |
| Mupr6472g00001 | 1224 | MobiDBLite | consensus disorder prediction | 1115 | 1136 | - | - | |
| Mupr6472g00001 | 1224 | CDD | FYVE_like_SF | 553 | 605 | - | - | |
| Mupr6472g00001 | 1224 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 363 | 373 | IPR000408 | - | |
| Mupr6472g00001 | 1224 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 325 | 376 | IPR000408 | - | |
| Mupr6472g00001 | 1224 | SUPERFAMILY | FYVE/PHD zinc finger | 543 | 611 | IPR011011 | - | |
| Mupr6472g00001 | 1224 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 545 | 617 | IPR013083 | - | |
| Mupr6472g00001 | 1224 | PRINTS | Chromosome condensation regulator RCC1 signature | 311 | 327 | IPR000408 | - | |
| Mupr6472g00001 | 1224 | PRINTS | Chromosome condensation regulator RCC1 signature | 486 | 507 | IPR000408 | - | |
| Mupr6472g00001 | 1224 | PRINTS | Chromosome condensation regulator RCC1 signature | 428 | 446 | IPR000408 | - | |
| Mupr6472g00001 | 1224 | PRINTS | Chromosome condensation regulator RCC1 signature | 327 | 341 | IPR000408 | - | |
| Mupr6472g00001 | 1224 | PRINTS | Chromosome condensation regulator RCC1 signature | 220 | 236 | IPR000408 | - | |
| Mupr6472g00001 | 1224 | PRINTS | Chromosome condensation regulator RCC1 signature | 270 | 286 | IPR000408 | - | |
| Mupr6472g00001 | 1224 | Gene3D | - | 135 | 380 | IPR009091 | - | |
| Mupr6472g00001 | 1224 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 272 | 319 | IPR000408 | - | |
| Mupr6472g00001 | 1224 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 325 | 373 | IPR000408 | - | |
| Mupr6472g00001 | 1224 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 492 | 537 | IPR000408 | - | |
| Mupr6472g00001 | 1224 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 438 | 486 | IPR000408 | - | |
| Mupr6472g00001 | 1224 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 218 | 266 | IPR000408 | - | |
| Mupr6472g00001 | 1224 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 389 | 435 | IPR000408 | - | |
| Mupr6472g00001 | 1224 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 491 | 542 | IPR000408 | - | |
| Mupr6472g00001 | 1224 | Coils | Coil | 744 | 785 | - | - | |
| Mupr6472g00001 | 1224 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 270 | 324 | IPR000408 | - | |
| Mupr6472g00001 | 1224 | MobiDBLite | consensus disorder prediction | 846 | 875 | - | - | |
| Mupr6472g00001 | 1224 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 218 | 269 | IPR000408 | - | |
| Mupr6472g00001 | 1224 | MobiDBLite | consensus disorder prediction | 906 | 927 | - | - | |
| Mupr6472g00001 | 1224 | MobiDBLite | consensus disorder prediction | 961 | 980 | - | - | |
| Mupr6472g00001 | 1224 | MobiDBLite | consensus disorder prediction | 995 | 1030 | - | - | |
| Mupr6472g00001 | 1224 | MobiDBLite | consensus disorder prediction | 622 | 643 | - | - | |
| Mupr6472g00001 | 1224 | Gene3D | - | 381 | 543 | IPR009091 | - | |
| Mupr6472g00001 | 1224 | FunFam | PH, RCC1 and FYVE domains-containing protein 1 | 130 | 378 | - | - | |
| Mupr6472g00001 | 1224 | SMART | fyve_4 | 539 | 610 | IPR000306 | GO:0046872 | |
| Mupr6472g00001 | 1224 | Pfam | FYVE zinc finger | 543 | 608 | IPR000306 | GO:0046872 | |
| Mupr6472g00001 | 1224 | ProSiteProfiles | BRX domain profile. | 1143 | 1198 | IPR013591 | - | |
| Mupr6472g00001 | 1224 | ProSiteProfiles | Zinc finger FYVE/FYVE-related type profile. | 547 | 609 | IPR017455 | - | |
| Mupr6472g00001 | 1224 | SUPERFAMILY | RCC1/BLIP-II | 158 | 544 | IPR009091 | - | |
| Mupr6472g00001 | 1224 | MobiDBLite | consensus disorder prediction | 623 | 643 | - | - | |
| Mupr6472g00001 | 1224 | Pfam | Transcription factor regulating root and shoot growth via Pin3 | 1144 | 1197 | IPR013591 | - | |
| Mupr6472g00001 | 1224 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 138 | 808 | - | - | |
| Mupr6472g00001 | 1224 | MobiDBLite | consensus disorder prediction | 1011 | 1025 | - | - | |
| Mupr6472g00001 | 1224 | MobiDBLite | consensus disorder prediction | 901 | 980 | - | - | |
| Mupr6472g00001 | 1224 | MobiDBLite | consensus disorder prediction | 847 | 868 | - | - | |
| Mupr6472g00001 | 1224 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 439 | 490 | IPR000408 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mupr6472g00001 | Mupr-Chr6472 | 359 | 7136 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mupr6472g00001 | 1117 | 1197 | Major Intrinsic Protein MIP | AT1G31880 | 30.851 | 9.99e-08 | 53.9 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mupr6472g00001 | - | - | gmx:100798841 | 1394.79 |