Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr6463g00001 GAAAGGGAGTTTCCAGAGCGAGAGAGAGAGAGAGAGAGAAACAAAAAGATGGGAAGGGGGAGGGTTGAACTGAAGAGGATAGAGAACAAAATTAACAGGCAAGTCACATTTGCCAAGAGAAGAAATGGGTTGCTCAAGAAGGCCTATGAGCTCTCAGTCCTCTGTGATGCTGAGGTTGCCCTCATCATTTTCTCCAACCGTGGCAAGCTTTATGAGTTCAGCAGCACTTCAAGGAACCTACTCGGGGAAGATCTTGCCCAAATGAATACAACTGAGCTCGAGCAGCTTGAGAATCAACTGGAGTCAGCACTGAGGAATATTAGGTCAACAAAGACTCAATTCATGCTTGACCAGCTTGCTGATCTTCACCACCGGGAAACAATGCTTGTTGAAACTAATAATGTGTTAAGGAGTAAGTTGGAAGAAACTACTAACTCACAAATTCCAGTAAGTATGGGTTTGGAAGCTGGAGGATCTAACATCCATTACACCAACTTTCTACCTCAATCAGAGGGCTTTTTCCAGCCAGTGGGAGTGAATCCCAACTTGCAAATTGGATACAACCCGACTGGTCCTGATGATGCAGACGTAGGAGCTTCATCCTTAAGTATGCATGGATTCGCCTCTGGGTGGATGCTTTGA 642 0.4533 EREFPERERERERNKKMGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFSSTSRNLLGEDLAQMNTTELEQLENQLESALRNIRSTKTQFMLDQLADLHHRETMLVETNNVLRSKLEETTNSQIPVSMGLEAGGSNIHYTNFLPQSEGFFQPVGVNPNLQIGYNPTGPDDADVGASSLSMHGFASGWML 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr6463g00001 213 CDD MADS_MEF2_like 18 77 IPR033896 GO:0000977|GO:0045944
Mupr6463g00001 213 Pfam K-box region 72 140 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mupr6463g00001 213 SUPERFAMILY SRF-like 18 96 IPR036879 GO:0003677|GO:0046983
Mupr6463g00001 213 SMART madsneu2 17 76 IPR002100 GO:0003677|GO:0046983
Mupr6463g00001 213 ProSiteProfiles K-box domain profile. 56 146 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mupr6463g00001 213 PANTHER SERUM RESPONSE FACTOR HOMOLOG 19 134 - -
Mupr6463g00001 213 FunFam MADS-box transcription factor MADS-MC 29 102 - -
Mupr6463g00001 213 Gene3D - 29 99 IPR036879 GO:0003677|GO:0046983
Mupr6463g00001 213 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 26 73 IPR002100 GO:0003677|GO:0046983
Mupr6463g00001 213 Coils Coil 86 113 - -
Mupr6463g00001 213 ProSitePatterns MADS-box domain signature. 19 73 IPR002100 GO:0003677|GO:0046983
Mupr6463g00001 213 ProSiteProfiles MADS-box domain profile. 17 77 IPR002100 GO:0003677|GO:0046983
Mupr6463g00001 213 PRINTS MADS domain signature 54 75 IPR002100 GO:0003677|GO:0046983
Mupr6463g00001 213 PRINTS MADS domain signature 19 39 IPR002100 GO:0003677|GO:0046983
Mupr6463g00001 213 PRINTS MADS domain signature 39 54 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr6463g00001 Mupr-Chr6463 15195 20113 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr6463g00001 17 213 MADS-box Gene Family AT5G15800 45.802 4.30e-65 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mupr6463g00001 K-box 1.3e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr6463g00001 K09264 - gmx:100797819 327.405