Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr6442g00001 ATGGGGAGAAGCCCTTGTTGCTCAAAGGAGGGCTTGAATAGAGGTGCTTGGACAGCTCAAGAAGACAAAACCCTCACCAAGTACATCACACTCCATGGTGTAGGAAGATGGAGAAACCTTCCCCAAAAAGCAGGTTTGAAAAGATGTGGGAAAAGTTGCAGACTTCGTTGGTTGAATTATCTGAGACCAGATATTAAGAGAGGCAACATATCCTCAGATGAAGAGGAGCTCATAGTGAGGCTCCACAAGCTCCTGGGAAACAGATGGTCTTTAATAGCGGGGAGGCTTCCAGGACGAACAGACAATGAAATAAAGAATTATTGGAACACCAATTTAGGCAAAAGGGTTAAAGATGGAGACCAAACCATAACTACTTGTTCTCGTAGGCTCTCATCTCAACTACCCAATGAAAATGAAAACAAGACACAGAATCCAATGCCTCACTTAGGCACTCCTAAACTAAATTCCCACGTGATCCGTACAAAGGCTACGAAATGCTCTAAGGTATTAATCTTAAACCCACTTCCTCAACCATCAATGCAATTGCCGAACAAGTCCAACGGAGAAGTAGAAGTAGAAGAAGAAGGAACGCTTGTGGATGCCCTAAATAATAAAATGGAACGAGGTGCATACGACAATGATATACTGCCGTTTTGCGGTGAAGAAAAAGAAGTCTCAAATGATTTGCTCGTAGATTTCAACGTGGGGGATATATGCTTGTCTGATCTTCTCAACTCAGATTTGTCAAATACGTACAATTTGAGCTGCACTGAACCCATCATGTTATCTGATGAACATCTCAACGAGTGGACGCAAATCGATTTCGCGGACGCGTTCAACAACATACATTCTTTTCATTTCGTTCCTTGA 870 0.4253 MGRSPCCSKEGLNRGAWTAQEDKTLTKYITLHGVGRWRNLPQKAGLKRCGKSCRLRWLNYLRPDIKRGNISSDEEELIVRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTNLGKRVKDGDQTITTCSRRLSSQLPNENENKTQNPMPHLGTPKLNSHVIRTKATKCSKVLILNPLPQPSMQLPNKSNGEVEVEEEGTLVDALNNKMERGAYDNDILPFCGEEKEVSNDLLVDFNVGDICLSDLLNSDLSNTYNLSCTEPIMLSDEHLNEWTQIDFADAFNNIHSFHFVP 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr6442g00001 289 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Mupr6442g00001 289 SMART sant 66 114 IPR001005 -
Mupr6442g00001 289 SMART sant 13 63 IPR001005 -
Mupr6442g00001 289 MobiDBLite consensus disorder prediction 132 152 - -
Mupr6442g00001 289 CDD SANT 16 61 IPR001005 -
Mupr6442g00001 289 Gene3D - 71 145 - -
Mupr6442g00001 289 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Mupr6442g00001 289 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Mupr6442g00001 289 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Mupr6442g00001 289 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Mupr6442g00001 289 MobiDBLite consensus disorder prediction 132 150 - -
Mupr6442g00001 289 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 160 - -
Mupr6442g00001 289 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Mupr6442g00001 289 Gene3D - 14 66 - -
Mupr6442g00001 289 FunFam MYB-related transcription factor 13 66 - -
Mupr6442g00001 289 CDD SANT 71 112 IPR001005 -
Mupr6442g00001 289 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr6442g00001 Mupr-Chr6442 15598 16889 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr6442g00001 1 116 MYB Transcription Factor Family AT5G49330 73.276 2.62e-59 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mupr6442g00001 Myb_DNA-binding 8.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr6442g00001 K09422 - gmx:100781908 374.015