Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr6429g00005 ATGAAGAGTAAAAAAAGGGGAAAAGACAGAAAGTGCACTTCAGAAGAAGCCAGTTTGGCTTGTGTTTTGGTCTCTTGTACGTGCGAGCTTCAAAGGCATCCTTTAGTTTCCTCATCCACATTCTTCCATCCTCTTCCCTCTCTCTCTCTCTCCTCTCACACACTCACACACCACACAAAACTGAAACTTCCTCAAGTAGCTAGTTTGGTGGTGGAAGAAAAAATGTCCAATTTGACGTCTGCATCCAGTGAAATAAGTGCTTCTTCCGGAATCAGGAACGAAAACGGTTCTCTCTATGCTCAATTTTCCTCCACCTCAATAAATCAAGAACCACCGCAACCTAAAAAGAAGCGAAGTCTTCCAGGCCACCCAGAGCCAGGGGCAGAAGTGATAGCTTTGACTCCGCAGACCCTTTTGGCAACGAACAGGTTCGTTTGTGAGATATGTAACAAAGGGTTTCAAAGAGATCAGAATCTGCAGCTTCACAGAAGAGGGCACAATTTGCCATGGAAGCTAAAGAAAAAGAACAGCAAAGAGGCGAGAAAGAAAGTGTACGTGTGTCCAGAGGAAACATGCGTTCACCATGACCCGTCAAGGGCCCTTGGGGACCTCACAGGAATCAAGAAGCACTTTTTCAGGAAGCATGGGGAGAAGAAGTGGAAGTGTGACAAGTGCTCCAAACGCTATGCAGTTCAATCGGATTGGAAAGCCCATTTCAAAGTTTGTGGCACTAGAGAATATAAATGCGACTGTGGTACCCTCTTCTCTAGAAGAGACAGCTTTATCACTCACAGAGCCTTCTGTGATGCCTTAGCACAAGAAAGCATTAGAACAGTGAACCCTCACCCTCACCCTCACCCTCACCACCCTCTCCTGTCATCAACTTACAGCCAATTTCCTAGGCATGCCCTTCAAGCACCATCACTTCTGAAAAGAGAACAAGAATTCAACTTCTTAAGTCAAGAAATTCCATCATGGTTGGCTTCTCCACCGGCAGAAGAAACTATCAGAAGCTTAGACTTCTCAACGCCACATGCGAACAACCAGTCCTTCGTCCAGCACGAAAACCCTAACCCTACTTTGGTTCCTTCTTTGAGTTCCTTCCCTTATTCAACCTCGCCTTCTCCTCACATGTCAGCCACTGCTTTGTTGCAAAAAGCGTCGCAAATAGGCGCAACAGTGAGTAGTAGTGCAGCTTCAGAAGCGATGCTAAGACCCCACTTGTTAGTGCAGCAGGTTCACGTGCCCGAGTGTAGTAGTACTATAGGGTATTACATGGCTCCATCTTCGGCCGTTTCTGGAACGGTTATGCCCTCACGTGAAGAAATAGTAGGGACTTGTGGCTTTGCTCGTGGCTTGGCATCTTAA 1368 0.4656 MKSKKRGKDRKCTSEEASLACVLVSCTCELQRHPLVSSSTFFHPLPSLSLSSHTLTHHTKLKLPQVASLVVEEKMSNLTSASSEISASSGIRNENGSLYAQFSSTSINQEPPQPKKKRSLPGHPEPGAEVIALTPQTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKKKNSKEARKKVYVCPEETCVHHDPSRALGDLTGIKKHFFRKHGEKKWKCDKCSKRYAVQSDWKAHFKVCGTREYKCDCGTLFSRRDSFITHRAFCDALAQESIRTVNPHPHPHPHHPLLSSTYSQFPRHALQAPSLLKREQEFNFLSQEIPSWLASPPAEETIRSLDFSTPHANNQSFVQHENPNPTLVPSLSSFPYSTSPSPHMSATALLQKASQIGATVSSSAASEAMLRPHLLVQQVHVPECSSTIGYYMAPSSAVSGTVMPSREEIVGTCGFARGLAS 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr6429g00005 455 FunFam protein indeterminate-domain 5, chloroplastic-like 198 277 - -
Mupr6429g00005 455 ProSiteProfiles Zinc finger C2H2 type domain profile. 144 166 IPR013087 -
Mupr6429g00005 455 SMART c2h2final6 185 215 IPR013087 -
Mupr6429g00005 455 SMART c2h2final6 220 240 IPR013087 -
Mupr6429g00005 455 SMART c2h2final6 144 166 IPR013087 -
Mupr6429g00005 455 SUPERFAMILY beta-beta-alpha zinc fingers 143 240 IPR036236 -
Mupr6429g00005 455 ProSitePatterns Zinc finger C2H2 type domain signature. 146 166 IPR013087 -
Mupr6429g00005 455 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 100 400 IPR031140 -
Mupr6429g00005 455 MobiDBLite consensus disorder prediction 105 128 - -
Mupr6429g00005 455 Gene3D Classic Zinc Finger 128 195 - -
Mupr6429g00005 455 FunFam protein indeterminate-domain 12-like 123 191 - -
Mupr6429g00005 455 Gene3D Classic Zinc Finger 197 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr6429g00005 Mupr-Chr6429 32360 37218 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr6429g00005 71 397 IDZ Gene Family AT1G55110 54.857 9.30e-114 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mupr6429g00005 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr6429g00005 K25870 - gmx:100783557 504.597