Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr6362g00001 GGGCTAGCTGAAGAAATTAATGCAAACGTTGAGAACAACGAAAACGAAGTGAGCCCTCAACAATCACTAGAATCAATATTGCAGAGGCCCCTTCCTTTATTTCCCCTCACTGCTGAAAGTGAGCCACAGATGATTCTCTCTGAACAGGATCCCACTACTGGTGATGAATCCTCTAATGTAGCATTGGAGTTCAACAATGCTCATTCAAGTTCCGTACAAAATAGGGCTTCGAACGATGTTGATTTGTCACTAAGCTTAGGCAATGAGGGTGCTAAAAGATCTGATGCCATTGCCAACAATGTTGCACCAGGAGGAATGAATGGAGGCACCTCAACAAACGTTACGCTCTTACCATCCAAGAGAACATCTGGAGAATTTGAGTATGGAGGAAGTTCGAACATGGATGAACAAGTTTCACTGCCCAAACAACGTGTCACTGAGTTACATGTGAGTGCCAATAACAATGTGAACCCATCACCATCACCGGATCTCATGCAAGGACATGATGTTAACCCACAGAATGGAGCAGCTCCTACTCCACCACAACAAGTACAACATGATTATCAAAATGTTATAGTGCAATATTGTCCGCTGCACGACCAAGCCTCCTCGCAACATAACCTACTGCCTCTTTCCATGAGCGCACCAAACAGTACTCCTAGTCAGGTGACTGTTCCATCTGATACTCAAACGGTAGCTGACCTAGTTGGGAATTTTCCAGAAAACAGATCTTATATGGACAATGATGGTGTTTTCGTTGGACGGAGTCGTTTTACTTTCTCCCAAACATTCAATCCTGCTGAACCGATACAGTTAATAACAAGATATGTGGACGATAATGGCAGAGTTCGTAATGCTCGAGGAATTTTCTACTACCCTCTCCGTGACCAAAATGGCCCCTCTTCAGCTTCAGGTCCTTCACAAGGATCCCGAGAAATATTGAACTATTCTGCTGCAGCAACTAGTTCTGCAACTCGGAACAATCATAATCAAATCACAATACCTTCTTCACTTCGACCTCATGTTAGGCTTCCATTTCAGATAGATTTTCATCTCCCACCCAATTTTCAGCCCAAAACTTTATTTTTGGATAATTACTTAAAATCTGTTGTGGACTATGGTAATGCGGACTGTGTATATGTTTCTATGATTGAACGCAAGATTCAATCTATCCTGGATCACCTACGCAGTGGTCGCTCTCTATTGTTCCAGGCGCTTCAGCAAGCGGGGATCCGAAATCTATTTGATGCTTCACGACCACACATTGGACTAACTGTCGAAACAATCATGCAATACATTACGCGTGAAAATTTCGTGTCAGCTGAAAACGTGGATCTAGAAGATAGAGAAAAATGCATCATCTGTATGGAGGAATATGAGGATGGAGATGAAATTGGGAAGCTGGATTTATGTGTGCACAAGTTTCACATTCAATGCGTCAAAGAATGGCTCATGAACAAGAACACATGCCCAATCTGCAAGAGAACTGCGTTAACTATGAATAATGTCGTCGAAAATGAAGCTGGAGCTGAAGTTAATAGTGAAAATGTCAATGCT 1557 0.4252 GLAEEINANVENNENEVSPQQSLESILQRPLPLFPLTAESEPQMILSEQDPTTGDESSNVALEFNNAHSSSVQNRASNDVDLSLSLGNEGAKRSDAIANNVAPGGMNGGTSTNVTLLPSKRTSGEFEYGGSSNMDEQVSLPKQRVTELHVSANNNVNPSPSPDLMQGHDVNPQNGAAPTPPQQVQHDYQNVIVQYCPLHDQASSQHNLLPLSMSAPNSTPSQVTVPSDTQTVADLVGNFPENRSYMDNDGVFVGRSRFTFSQTFNPAEPIQLITRYVDDNGRVRNARGIFYYPLRDQNGPSSASGPSQGSREILNYSAAATSSATRNNHNQITIPSSLRPHVRLPFQIDFHLPPNFQPKTLFLDNYLKSVVDYGNADCVYVSMIERKIQSILDHLRSGRSLLFQALQQAGIRNLFDASRPHIGLTVETIMQYITRENFVSAENVDLEDREKCIICMEEYEDGDEIGKLDLCVHKFHIQCVKEWLMNKNTCPICKRTALTMNNVVENEAGAEVNSENVNA 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr6362g00001 519 ProSiteProfiles Zinc finger RING-type profile. 452 494 IPR001841 -
Mupr6362g00001 519 SUPERFAMILY RING/U-box 432 500 - -
Mupr6362g00001 519 MobiDBLite consensus disorder prediction 152 183 - -
Mupr6362g00001 519 SMART ring_2 452 493 IPR001841 -
Mupr6362g00001 519 MobiDBLite consensus disorder prediction 1 23 - -
Mupr6362g00001 519 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 64 498 IPR045191 GO:0061630
Mupr6362g00001 519 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 421 498 IPR013083 -
Mupr6362g00001 519 MobiDBLite consensus disorder prediction 8 23 - -
Mupr6362g00001 519 Pfam Ring finger domain 451 494 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr6362g00001 Mupr-Chr6362 9953 16776 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr6362g00001 357 498 C3H Transcription Factor Family AT2G15530 28.824 8.48e-16 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr6362g00001 - K10635 vra:111241966 170.244