Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr6359g00001 ATGGACGCATTTTCCCTATCACACAGAGCAATGGATAATGGACAGCCAGTGTTGGGTGGCAACGTGAGTGCCTTACTAATTGCCATGGGTTCAGCCAGTTTTGTGGTCACAGTGTACCATCTCGTAATCCTGTGTCGCAACCAGCGCCACGTCACCAACCATAACTCGGAACAAGAGCGAGCACGGAGCACCGGAGAGAACGCTCTGGTGCCGCACCTGATTCCAGCCCACAAGTACCAAAAGAGGAAGAAAAGTAACGATGACGTGGATGAAGACGGCACGTGCGCTGTGTGCCTGGGAGACTTTGAAGAGGGTGAAGAGTTGAGAACGTTGCCAGAGTGCATGCACTCTTTCCACGTCACCTGCATAGATACGTGGCTCCACTCCCACTCCAGCTGTCCCGTTTGCCGGGCTCACGCCACTCCTTCGCCGGCGCTGCTGCACCGTGTGCCGGAGTTTGGTTCCACTGCGTTGAATGCACATCACACCGTAGATATCGGCCAAATACCTCTCGTTCAAAATGACTTGCCGCCACCGTGA 540 0.5463 MDAFSLSHRAMDNGQPVLGGNVSALLIAMGSASFVVTVYHLVILCRNQRHVTNHNSEQERARSTGENALVPHLIPAHKYQKRKKSNDDVDEDGTCAVCLGDFEEGEELRTLPECMHSFHVTCIDTWLHSHSSCPVCRAHATPSPALLHRVPEFGSTALNAHHTVDIGQIPLVQNDLPPP 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr6359g00001 179 ProSiteProfiles Zinc finger RING-type profile. 95 137 IPR001841 -
Mupr6359g00001 179 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 23 141 IPR044675 -
Mupr6359g00001 179 SUPERFAMILY RING/U-box 78 143 - -
Mupr6359g00001 179 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 48 142 IPR013083 -
Mupr6359g00001 179 CDD RING-H2_EL5-like 95 137 - -
Mupr6359g00001 179 Pfam Ring finger domain 94 137 IPR001841 -
Mupr6359g00001 179 SMART ring_2 95 136 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr6359g00001 Mupr-Chr6359 599 1138 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr6359g00001 24 171 C3H Transcription Factor Family AT5G17600 36.310 2.75e-22 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr6359g00001 - - gmx:100809606 210.305