Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr6354g00004 ATGTCTACAGCGGCGCAGCCCAGGGCCAAGAAGACGGCTTCATCCAAGAAGCCCCTCTCCCATCCTCCCTTCGCCGTGATGATAACGGAGGCTATTTCCAGTCTGAAGGAGAGAACTGGTTCGAGTCAATATGCGATAACGAAGTTTATCGAAGGGAAGCACAAGGAGCTACCTCCAACCTACAAGAAGCTTGTCCTCGTTCACATCAAGAAGTCTGTGGCCGCTGGCAAGCTCGTTAAGGTTAAAAACTCATTCAAGCTTGCGCCGACCAAACCTGCTTCGGTTAAAGCTGATTCAGCTACTGCCCCTAAGAAGCCCAAGGCTGTGTCTAAGCCCACAGCCAAGGCCGCTTCCAAGCCCAAATCTACACCAAAGAAGAAGGCTGTTGCCAAGCCTAAGGCCAAGACTGCGGCGGCAACTGCTAAACCTAAGCCTGCTAAGGTCACAAGGAAGGTCCCAGCTAAGCCTGCAAAGAAGACCCCAGTCAAGGCCGTGAAGAAGCCCAAGAGTGTAGTGAAGAAACCCAAGAGTGTGAAATCTCCGGTGAAGAAGGCTAAAAATTGA 564 0.516 MSTAAQPRAKKTASSKKPLSHPPFAVMITEAISSLKERTGSSQYAITKFIEGKHKELPPTYKKLVLVHIKKSVAAGKLVKVKNSFKLAPTKPASVKADSATAPKKPKAVSKPTAKAASKPKSTPKKKAVAKPKAKTAAATAKPKPAKVTRKVPAKPAKKTPVKAVKKPKSVVKKPKSVKSPVKKAKN 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr6354g00004 187 MobiDBLite consensus disorder prediction 1 21 - -
Mupr6354g00004 187 PRINTS Histone H5 signature 34 51 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Mupr6354g00004 187 PRINTS Histone H5 signature 7 28 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Mupr6354g00004 187 PRINTS Histone H5 signature 173 187 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Mupr6354g00004 187 PRINTS Histone H5 signature 151 168 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Mupr6354g00004 187 PRINTS Histone H5 signature 114 128 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Mupr6354g00004 187 Pfam linker histone H1 and H5 family 21 88 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mupr6354g00004 187 Gene3D - 15 109 IPR036388 -
Mupr6354g00004 187 CDD H15 20 97 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mupr6354g00004 187 MobiDBLite consensus disorder prediction 87 187 - -
Mupr6354g00004 187 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 20 89 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mupr6354g00004 187 SMART h15plus2 18 84 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mupr6354g00004 187 PANTHER HISTONE H1 7 177 - -
Mupr6354g00004 187 MobiDBLite consensus disorder prediction 148 187 - -
Mupr6354g00004 187 SUPERFAMILY "Winged helix" DNA-binding domain 16 92 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr6354g00004 Mupr-Chr6354 38392 39055 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr6354g00004 22 87 Single Myb Histone (SMH) Gene Family AT1G72740 33.333 7.59e-08 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr6354g00004 K11275 - gmx:100785055 176.792