Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr6312g00001 ATGGGGAGAGGAAAGATTGCGATTCGAAGGATCGACAACTCCACTAGCCGGCAAGTAACTTTCTCTAAGAGAAGAAATGGATTGCTTAAGAAAGCAAGAGAATTATCAATCCTCTGTGATGCTGAAGTTGGATTGATGGTGTTTTCTAGCACTGGCAAGCTTTATGACTATGCAAGCACAAGGTACAAAGCATACAAATTAATTGGTTGCAAGGCATTGAGGTTCAATATTTGGTAA 237 0.4008 MGRGKIAIRRIDNSTSRQVTFSKRRNGLLKKARELSILCDAEVGLMVFSSTGKLYDYASTRYKAYKLIGCKALRFNIW 78
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr6312g00001 78 CDD MADS_MEF2_like 2 60 IPR033896 GO:0000977|GO:0045944
Mupr6312g00001 78 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Mupr6312g00001 78 Gene3D - 13 72 IPR036879 GO:0003677|GO:0046983
Mupr6312g00001 78 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mupr6312g00001 78 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mupr6312g00001 78 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mupr6312g00001 78 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mupr6312g00001 78 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Mupr6312g00001 78 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 62 - -
Mupr6312g00001 78 SUPERFAMILY SRF-like 2 64 IPR036879 GO:0003677|GO:0046983
Mupr6312g00001 78 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr6312g00001 Mupr-Chr6312 4467 5242 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr6312g00001 1 64 MADS-box Gene Family AT4G37940 78.125 2.08e-32 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mupr6312g00001 SRF-TF 9.2e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr6312g00001 K09264 - gmx:100805092 121.324