Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr6298g00002 ATGGGTAACAGTATTAAAGCTGAGAGACGCATCTACAGGTCTCGCTCATGCATGGCTACTAAATATCCTCCCCAACCTCAGCCTCAGGGGAAGCTAATCCACTTTTTCAAGATCATAACGGTTCACAATCTTCATGAAGGAAAGCTATTGATATCATATATACTAATGACTATGAGCGTCCGATTAGCAGCTATAACGATCCCAAATAAGTTTGTGGAGAAATATGGAGAAGGCTTATCAAATACTCTATTTCTTAAGACTCCAAATGGAGCTGAGTGGAAATTGAATTTGGAAAAACGTGATGGTAAAATATGGTTTCAAAAGGGCTGGAAAGAATTTGCAGAGTATCACTCTCTAGCTCATGGCCATCTTTTAGTTTTCAGATGCCAAAGAACTTCCCATTTTCAGGTATACATCCATGATTTGAGTGCCTTAGAGATAGATTACCCTTTCAAAGAAATAGAAGGTAAAACGACCTCCAATATTCAAGGAAATAAACCTCCAAATGATGAAAATTTGGAATATCACAGACCAGGTCAAAAGAGGAAAGATAACTCGTCGTTGGAATGTCTTCAACTATATCAAATGATGAGAAGTAAGTGTGCTAAAGTTGAGAACAGCTTGGTATTGCCAAAGAAGGCTCTGCATCATACTGACACAAAGTGCAAAGAAAAATCGAAAGTTGTTGCTAACCAAGTTACAGCTCTTGATAGAGCAAGTTCTGTCAAAGCTTGTAATCCGTTCTTCTTGGTTGTCATGCGTCCTTCATATGTCCATTCTAATGGAGGTCCTCTGAATTTACCAGCTGAGTTTTGTAGGAGACACTTTGGTTTACACAAGAAGCAAAGACATATCAACCTTCAGGTGTTAAATGGGAGAATTTGGCCTGCAAAGTACACAATCCAGATAGACAATACAAGAGCCAAATTTAGACTCTCAAGTGGATGGAAGGCATTTGTCAAGCACAATAACTTGAAAGTTGGTGATTTTTGCACCTTTGAGCTGATTGATGCAACTAAACTAACCTTCCTTGTTCTCATCTTCAGAGAGACAGACAGTTCAAATTGTTCAACATCTCAAGAATCTGACCAACTGAGAACAGCTTGTCAAAGACAGAGAAAAGAAATGAAAACCATCACTGCTACCAAA 1149 0.3864 MGNSIKAERRIYRSRSCMATKYPPQPQPQGKLIHFFKIITVHNLHEGKLLISYILMTMSVRLAAITIPNKFVEKYGEGLSNTLFLKTPNGAEWKLNLEKRDGKIWFQKGWKEFAEYHSLAHGHLLVFRCQRTSHFQVYIHDLSALEIDYPFKEIEGKTTSNIQGNKPPNDENLEYHRPGQKRKDNSSLECLQLYQMMRSKCAKVENSLVLPKKALHHTDTKCKEKSKVVANQVTALDRASSVKACNPFFLVVMRPSYVHSNGGPLNLPAEFCRRHFGLHKKQRHINLQVLNGRIWPAKYTIQIDNTRAKFRLSSGWKAFVKHNNLKVGDFCTFELIDATKLTFLVLIFRETDSSNCSTSQESDQLRTACQRQRKEMKTITATK 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr6298g00002 383 PANTHER B3 DOMAIN-CONTAINING 245 372 - -
Mupr6298g00002 383 MobiDBLite consensus disorder prediction 170 184 - -
Mupr6298g00002 383 MobiDBLite consensus disorder prediction 158 184 - -
Mupr6298g00002 383 SMART B3_2 57 143 IPR003340 GO:0003677
Mupr6298g00002 383 SMART B3_2 249 351 IPR003340 GO:0003677
Mupr6298g00002 383 SUPERFAMILY DNA-binding pseudobarrel domain 55 150 IPR015300 -
Mupr6298g00002 383 CDD B3_DNA 34 141 IPR003340 GO:0003677
Mupr6298g00002 383 ProSiteProfiles B3 DNA-binding domain profile. 250 351 IPR003340 GO:0003677
Mupr6298g00002 383 ProSiteProfiles B3 DNA-binding domain profile. 50 143 IPR003340 GO:0003677
Mupr6298g00002 383 Gene3D - 31 144 IPR015300 -
Mupr6298g00002 383 Pfam B3 DNA binding domain 249 350 IPR003340 GO:0003677
Mupr6298g00002 383 Pfam B3 DNA binding domain 59 140 IPR003340 GO:0003677
Mupr6298g00002 383 Gene3D - 226 353 IPR015300 -
Mupr6298g00002 383 SUPERFAMILY DNA-binding pseudobarrel domain 246 351 IPR015300 -
Mupr6298g00002 383 CDD B3_DNA 247 349 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr6298g00002 Mupr-Chr6298 6792 9327 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr6298g00002 54 352 B3 DNA Binding Superfamily AT3G18990 28.909 3.51e-34 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mupr6298g00002 B3 3.2e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr6298g00002 - - ccaj:109791706 484.182