Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr6273g00002 ATGGACAAGGCAGCTGCTGAGTTTCAAAGTGAGACAGCAGATCCTGCTCTTCTTCTTTGCCATCAGACTTGTGCTGGAAATGGAAAAGGTGACAAGAGGTCCTTGATTCCAGAATCCAGAAGACCAAGCCTCACTTCTTTGCAAATACCAGCAAGGTCACTGGAAAATGCATTATCTTCTTCAAGCAAGACTGATGGTCCCACATTGATGTCCAGTCCAGGTTCCAGTAGAGGACTACCCCCAAGGCCACATTCAGCCAGAGTCAAGTCCTCTATGAGAAGTTTACTCTCTGAGAGGAGCTTTAGGGCTAAGCCTGGTTCACAAGATTGTGAAAGGACAGTTTTGATTGTTCCTGATAGCTTGCCTTCAGATGGTCCTGTGGATAATAAGCCTTCAACTTCAAGGTCCCTTTCTCTTAACAAGATTTTGTTCCCTTCATCAATGAAAGCAGCACATTCATTGCCAGTTACTCCAACTGCAAATTCAGGTGCAGAGAATGTACATGGAAGACATCTAGGCTGTGATTCTGATTTAAGTAAAATAGAAGTAAATAAGCACATAACTCGATCGTTTTCAGTTCCAGTTAATGTCAAAGCAGCTAATTTAAGGCCTACAGATTCTAGGAGCCTGATTCGTGTAATTTCAGCAAGATCTCTTCCTGGAACTAGTGATGGCAATTTAACTCACAATGCTTCGGGATCAGAGATTGTCATTGAAGATGCTTCTGAAGATATTCCAGAGGAAGATGCAGTTTGTAGGATTTGTCTGGTGGAGCTTGCGGAAGGAGGGAATACACTTAGGATGGAGTGCAGTTGTAAAGGTGAGCTTGCACTTGCTCACCAAGACTGTGCAGTAAAGTGGTTTAGTATCAAAGGAAACAAAACCTGTGATGTCTGCAGGCAGGAAGTCCAAAACCTTCCAGTAACACTCTTGAAAATTTCTAATCCTCAAACTGTTACTCGGCAGCCATTGAATGCACCAGCACCACAGCAGAGAGAAGTAACTTATTACAGGATATGGCAGGATATATCAGTACTTATCTTGGTCAGCATGCTTGCATACTTTTGTTTTCTTGAGGAACTACTGGTTTCAGATTTGGGCTCTCGTGCTCTTGCCATTTCATTACCTTTCTCCTGTGTTTTAGGTCTCCTTTCATCAATGATTGCTTCAACCATGGTGAGCGGGAGTTACATGTGGGCTTATGCTTGCTTCCAGTTTGCAATTGTCATCCTGTTTGCTCATGTGTTCTATACTATACTTAATGTCAATGCCATCCTCTCAGTTCTTCTCTCCTCATTCACTGGATTTGGGATTTCAATCAGCTTGAATTCTCTGCTAACGGAATATGTGAGATGGAGAACAAGAACACTGATTCAATTTTCGAATCAGAATGCTAACGCCACGCAGCAGCAAGAACATCAGAGACAGCGCCATCAACTGCAGAGGCCGCAGCAAGAGCAGCACCAATGA 1470 0.4327 MDKAAAEFQSETADPALLLCHQTCAGNGKGDKRSLIPESRRPSLTSLQIPARSLENALSSSSKTDGPTLMSSPGSSRGLPPRPHSARVKSSMRSLLSERSFRAKPGSQDCERTVLIVPDSLPSDGPVDNKPSTSRSLSLNKILFPSSMKAAHSLPVTPTANSGAENVHGRHLGCDSDLSKIEVNKHITRSFSVPVNVKAANLRPTDSRSLIRVISARSLPGTSDGNLTHNASGSEIVIEDASEDIPEEDAVCRICLVELAEGGNTLRMECSCKGELALAHQDCAVKWFSIKGNKTCDVCRQEVQNLPVTLLKISNPQTVTRQPLNAPAPQQREVTYYRIWQDISVLILVSMLAYFCFLEELLVSDLGSRALAISLPFSCVLGLLSSMIASTMVSGSYMWAYACFQFAIVILFAHVFYTILNVNAILSVLLSSFTGFGISISLNSLLTEYVRWRTRTLIQFSNQNANATQQQEHQRQRHQLQRPQQEQHQ 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr6273g00002 489 MobiDBLite consensus disorder prediction 475 489 - -
Mupr6273g00002 489 SMART ringv_2 251 300 IPR011016 GO:0008270
Mupr6273g00002 489 MobiDBLite consensus disorder prediction 39 75 - -
Mupr6273g00002 489 Pfam RING-variant domain 252 299 IPR011016 GO:0008270
Mupr6273g00002 489 ProSiteProfiles Zinc finger RING-CH-type profile. 244 306 IPR011016 GO:0008270
Mupr6273g00002 489 MobiDBLite consensus disorder prediction 468 489 - -
Mupr6273g00002 489 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 238 308 IPR013083 -
Mupr6273g00002 489 CDD RING_CH-C4HC3_MARCH 252 300 - -
Mupr6273g00002 489 PANTHER OS02G0165000 PROTEIN 36 471 - -
Mupr6273g00002 489 MobiDBLite consensus disorder prediction 26 109 - -
Mupr6273g00002 489 SUPERFAMILY RING/U-box 248 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr6273g00002 Mupr-Chr6273 12022 21094 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr6273g00002 246 306 C3H Transcription Factor Family AT2G37950 46.774 3.40e-13 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr6273g00002 - - gmx:100779396 775.393