Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr624g00003 ATGGCGTTGAAGGCAGCGAAGAAGCAAAAGCTGAAGAAACTCGCTATTCCTAGATCACAAAAGCCCGCCTCTCATCCTCCCTATGAACAGATGATTAAGGACGCGATTATCACGCTTAAGAAGAGAACTGGTTCGAGCCAGTATGCCATTGCTAAGTTCATCGAGGAGAAGCACAAGCATCTTCCAGGGTACTTTTGGAAGTTCCTGTTGTACCATTTGAAGAAGCTAGTTGCTTCTGAAAAGCTTGTCAAGGTCAAGGGATCCTTCAAGCTTCCACCAGCCAAGCCCAAGTCCAAATCCCAGTCTAAACCCAAGCCCAAAACAACCAAGTCAACTGCTAAGGCAAAGTCCAAACCCAAGCCTAAAGCCACTGCCAAGTCAAAGGGTGCTGCCAGGCCCAAAGCTGCTTTGACTAAGGCCAAGTCTTTGACTGTCGTAAAGCCCAAAACTGTTGCGAAGCAGAAGCCGAGTGCTAAGGCAATGCCCAAGAAAAGACCTGCGAAGGCTGCTGGAACATTGAGCAGAACTTCTCTAAGGAAGAAAGCCCTTGCTCCAAAATCAGCACTAAAGAAAGCTACTCCGAAAAAGAAAGCTCCTGCAAAAAGCGTGAAGCCCAAGAGCGTTAACTCATCGACGAAGAAAAATGCGACAATAACCGAGGGAAGTGAAGTCAAGGTCTCCTGA 684 0.4751 MALKAAKKQKLKKLAIPRSQKPASHPPYEQMIKDAIITLKKRTGSSQYAIAKFIEEKHKHLPGYFWKFLLYHLKKLVASEKLVKVKGSFKLPPAKPKSKSQSKPKPKTTKSTAKAKSKPKPKATAKSKGAARPKAALTKAKSLTVVKPKTVAKQKPSAKAMPKKRPAKAAGTLSRTSLRKKALAPKSALKKATPKKKAPAKSVKPKSVNSSTKKNATITEGSEVKVS 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr624g00003 227 CDD H15 22 104 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mupr624g00003 227 MobiDBLite consensus disorder prediction 1 15 - -
Mupr624g00003 227 MobiDBLite consensus disorder prediction 1 27 - -
Mupr624g00003 227 PANTHER HISTONE H1 7 203 - -
Mupr624g00003 227 MobiDBLite consensus disorder prediction 90 227 - -
Mupr624g00003 227 MobiDBLite consensus disorder prediction 184 202 - -
Mupr624g00003 227 Pfam linker histone H1 and H5 family 25 91 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mupr624g00003 227 MobiDBLite consensus disorder prediction 204 227 - -
Mupr624g00003 227 PRINTS Histone H5 signature 116 130 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Mupr624g00003 227 PRINTS Histone H5 signature 38 55 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Mupr624g00003 227 PRINTS Histone H5 signature 11 32 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Mupr624g00003 227 PRINTS Histone H5 signature 153 170 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Mupr624g00003 227 SMART h15plus2 22 88 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mupr624g00003 227 SUPERFAMILY "Winged helix" DNA-binding domain 21 105 IPR036390 -
Mupr624g00003 227 MobiDBLite consensus disorder prediction 100 127 - -
Mupr624g00003 227 Gene3D - 19 105 IPR036388 -
Mupr624g00003 227 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 24 93 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr624g00003 Mupr-Chr624 18713 19475 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr624g00003 26 111 Single Myb Histone (SMH) Gene Family AT1G72740 33.721 1.20e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr624g00003 K11275 - qsa:O6P43_006943 160.229