Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr6239g00005 ATGGATCCAGATGCGGAGGTGATAGCACTGTCACCGAAGACGCTAATGGCAACAAACAGGTTTATATGTGAAGTGTGCAATAAAGGGTTCCAAAGGGAGCAAAACCTACAGCTTCACAGAAGAGGACACAACCTGCCTTGGAAGCTAAAGCAGAAGAGTACAAAAGAGCCAAAGAGAAAGGTTTATCTGTGTCCCGAGCCCACATGCGTTCACCATGACCCTTCAAGGGCTCTTGGAGACCTCACTGGCATTAAGAAACACTACTCTCGCAAGCACGGTGAGAAGAAGTGGAAGTGTGATAAGTGCTCCAAGAAATATGCT 321 0.4704 MDPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSTKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYA 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr6239g00005 107 Gene3D Classic Zinc Finger 2 72 - -
Mupr6239g00005 107 Pfam Zinc-finger double-stranded RNA-binding 21 43 IPR022755 -
Mupr6239g00005 107 SMART c2h2final6 62 92 IPR013087 -
Mupr6239g00005 107 SMART c2h2final6 21 43 IPR013087 -
Mupr6239g00005 107 ProSiteProfiles Zinc finger C2H2 type domain profile. 21 43 IPR013087 -
Mupr6239g00005 107 ProSitePatterns Zinc finger C2H2 type domain signature. 23 43 IPR013087 -
Mupr6239g00005 107 SUPERFAMILY beta-beta-alpha zinc fingers 20 106 IPR036236 -
Mupr6239g00005 107 FunFam protein indeterminate-domain 12-like 1 68 - -
Mupr6239g00005 107 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 2 107 IPR031140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr6239g00005 Mupr-Chr6239 36105 36558 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr6239g00005 2 107 IDZ Gene Family AT2G02070 94.340 5.88e-70 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mupr6239g00005 zf-C2H2_jaz 3.5e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr6239g00005 K25870 - qsa:O6P43_025996 200.675