Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr6238g00002 ATGCTAACAGCAGAAGAAAGTGTTCCGTTGAAGCGTTGCAACGCCGAAGAGCCTATTCCACTTGAATGCGCAGAGCTGCTGTTACCGTATCTAACTCCCTCAGAACTCGCCAACGTCTCTTTGACCTCCAAATCCCTCCTTAAACTCTCCCACTCCGTTACTCTCCGCCGCTCCTCCGACGCTTCCAGATCCTTCGAGACCCTTCCAGTCCCGTTTCTTAACACCGTCGATGCCCACCCCTACGCGCACTTCCTCTACACGCGCTCCCAACTCCTCCCCTCCCCGCTCCTCGCTCGCCAGCCCTGGGGCTGGGGCTCTTCCGTGATTCCCCCCTCCTCTGTGCCGACTCACCTTCGTGCGGAGTCGGTGGGCCTCGTCGACGGGTCGGGTCGGGCCGTGTTGGGCTGCGACTGCGAGGCGTGTGCGGGGTCCGCGTGCCCCTGTGCGGGCTTGGATGGGTTGGATGATGTGGGCAGAGAGTGCGGACTCGGTTGCCGGTGTGGGCCGGAGTGCGGGAACCGGTTTACCAGGAATGGGGTTGCTGTAAGGGTGAAGATTGTTAGAGATGAGAGAAAAGGATGGGGTTTGCATGCCCACCAGTTCATTCGGAAAGGAGACTTCGTCTTTGAATATGCAGGTGAACTCTTGACAACCAAGGAAGCACAGAGGAGACATCAATATTATGATGAATTGGCTAAGCAGGGTCGTTTCTCTTCTGCTCTTTTAGTTGTAAGGGAACATCTTCCTTCTGGAAAAGCATGTTTGAGATTGAACATCGATGCCACAAGAATAGGAAATGTTGCACGGTTTGCAAATCATTCCTGTGGTGGTGGTAACTTAAGCACAAAGCTAGTTAGAAGTTCAGGAGCTTTGTTCCCCCGCCTATGCTTCTTTGCTTCGAAAGATATCCAAGAAGATGAAGAGCTTACTTTTAGCTATGGAGAAATCAGGAAAAGGCCTAATGGGTTGCCATGCTTTTGCAATAGCTCTTCTTGCTTTGGAACATTGCCCTCTGAAGACACTTGA 1026 0.5292 MLTAEESVPLKRCNAEEPIPLECAELLLPYLTPSELANVSLTSKSLLKLSHSVTLRRSSDASRSFETLPVPFLNTVDAHPYAHFLYTRSQLLPSPLLARQPWGWGSSVIPPSSVPTHLRAESVGLVDGSGRAVLGCDCEACAGSACPCAGLDGLDDVGRECGLGCRCGPECGNRFTRNGVAVRVKIVRDERKGWGLHAHQFIRKGDFVFEYAGELLTTKEAQRRHQYYDELAKQGRFSSALLVVREHLPSGKACLRLNIDATRIGNVARFANHSCGGGNLSTKLVRSSGALFPRLCFFASKDIQEDEELTFSYGEIRKRPNGLPCFCNSSSCFGTLPSEDT 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr6238g00002 341 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 58 332 - -
Mupr6238g00002 341 Gene3D SET domain 40 320 IPR046341 -
Mupr6238g00002 341 SMART set_7 182 320 IPR001214 GO:0005515
Mupr6238g00002 341 SUPERFAMILY SET domain 56 327 IPR046341 -
Mupr6238g00002 341 Pfam SET domain 193 314 IPR001214 GO:0005515
Mupr6238g00002 341 ProSiteProfiles SET domain profile. 182 314 IPR001214 GO:0005515
Mupr6238g00002 341 ProSiteProfiles Post-SET domain profile. 321 337 IPR003616 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr6238g00002 Mupr-Chr6238 11005 14745 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr6238g00002 160 336 C2H2 Transcription Factor Family AT2G23740 35.829 1.88e-24 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Mupr6238g00002 SET 3.6e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr6238g00002 K11433 - gmx:100786871 571.622