Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr6212g00001 ATGGAGGTTCCAGAAATGAAAGGCAAGACCGAAAGTCATGTGACATCGGCAGCAGCCTTTGTGGAAGGGGGGATTCAAGAAGCCTGTGATGATGCTTGCAGCATATGCCTTGAGGATTTTTGCAAAAGTGAACCTGCAACTGTCACTAATTGCAAGCATGATTTCCACCTGCAGTGCATTCTTGAATGGTGTCAGAGAAGCTCGCGATGCCCTCTGTGTTGGCAGGCTATCAGCTTGAAGGATGCTACCAGTCAAGAATTGCTTGAGGCAGTACAGCTGGAGAGGAGCTTGAGGAATACCCCATCAAGAAATGCTGCGATTTTTCATCATCCGACACTTGGTGATTTTGAATTTCAGCGTTTACCCATGAATGAGGGTGATATTGAACAGCGAGTGATTCAACATTTAGCTGCTGCAGCAGCAATGAGGAGAGCACACCAACAAGGCTGGAGGGAAGGCCAACGAACTAGGTCACCTGCTCATGGCCATCCAAACTTGTTAGTATACTCAACTCAGCCTAGTGCATCTCCATCTGGAGAGGGTAGCGAACCAGCTGCAATGCCGGCAGGAAGTCCATCTACCCCACTTACATTTTATGGAAATGAGCAATCATCGTCACAGCAGATCCCCCAATATCAAACTCCGAGTTCTTCTTTAACTCCTCGCACTATTATCACTGCAACAAATCCTCAAGGAACTCACTCTAATGATAGAAGGTTTGCCACTCATTCATTGCCTGCAAGCCAAGATAGAGAACAGCCATCAGAACAATCGTTCTCGGATACTCTGCGCTCCAGATTTAATGCAGTATCCACAAGATACAAAGAATCAATTTCAAAGGGCACGAGGGGATGGAAGGAGAGGCTGTTCTCTCCTAATTCTTCTATGTCAGAACTTGGGTCAGAAGTTAGGAGAGAATTGAATGCCAAAATTGCTAGTGTGTCTCGATTGGTGGAGCGCCTCGAAACAATAAGAGAAAATAATAGGGCTGCAAGCACTTCTTTGTCAAATCATTTGGTGAATCGATCCGATGCAGAGACAAGCAATCAAAACAATGTTGAAGCTCGCTCAGAATAA 1077 0.4568 MEVPEMKGKTESHVTSAAAFVEGGIQEACDDACSICLEDFCKSEPATVTNCKHDFHLQCILEWCQRSSRCPLCWQAISLKDATSQELLEAVQLERSLRNTPSRNAAIFHHPTLGDFEFQRLPMNEGDIEQRVIQHLAAAAAMRRAHQQGWREGQRTRSPAHGHPNLLVYSTQPSASPSGEGSEPAAMPAGSPSTPLTFYGNEQSSSQQIPQYQTPSSSLTPRTIITATNPQGTHSNDRRFATHSLPASQDREQPSEQSFSDTLRSRFNAVSTRYKESISKGTRGWKERLFSPNSSMSELGSEVRRELNAKIASVSRLVERLETIRENNRAASTSLSNHLVNRSDAETSNQNNVEARSE 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr6212g00001 358 MobiDBLite consensus disorder prediction 327 358 - -
Mupr6212g00001 358 MobiDBLite consensus disorder prediction 165 179 - -
Mupr6212g00001 358 SUPERFAMILY RING/U-box 25 80 - -
Mupr6212g00001 358 MobiDBLite consensus disorder prediction 326 358 - -
Mupr6212g00001 358 ProSiteProfiles Zinc finger RING-type profile. 33 73 IPR001841 -
Mupr6212g00001 358 Coils Coil 304 324 - -
Mupr6212g00001 358 MobiDBLite consensus disorder prediction 144 239 - -
Mupr6212g00001 358 FunFam E3 ubiquitin-protein ligase RHF2A isoform X1 11 83 - -
Mupr6212g00001 358 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 17 81 - -
Mupr6212g00001 358 Pfam Ring finger domain 32 73 IPR001841 -
Mupr6212g00001 358 MobiDBLite consensus disorder prediction 194 239 - -
Mupr6212g00001 358 SMART ring_2 33 73 IPR001841 -
Mupr6212g00001 358 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 23 90 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr6212g00001 Mupr-Chr6212 2720 6267 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr6212g00001 30 81 C3H Transcription Factor Family AT4G00335 46.154 3.20e-12 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr6212g00001 K19043 - gmx:100803582 577.785