Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr6200g00002 ATGTTAGTCAATAACTCATCTCCCTCGTCAGTTCCCACTTCTGACCCCTTTTCCTGCGCTGAGAATGCCACTACTACCAATAAAAGGAAGAGAAGACCTGCAGGAACACCAGATCCAGATGCTGAAGTGGTCTCCCTCTCACCCAAGACCTTGCTGGAATCAGATCGCTATGTGTGTGAGATCTGCAACCAAGGATTTCAGAGGGACCAGAACCTTCAGATGCATCGCCGTCGCCACAAGGTGCCCTGGAAACTCTTGAAGAGGGAGACACCTGTGGTGAAGAAGCGAGTATTTGTCTGCCCGGAGCCTACTTGTTTGCACCATGACCCGTGTCACGCTCTCGGTGACCTCGTTGGCATAAAGAAACATTTCAGAAGGAAACACAGCAATCACAAGCAATGGGTCTGCGACAGATGCTCCAAAGCCTATGCAGTGCAGTCCGATTACAAAGCTCATCTCAAAACCTGTGGCACCCGAGGTCACTCTTGCGATTGTGGCCGCGTTTTCTCAAGGGTAGAGAGCTTTATTGAGCACCAAGACGCGTGCAACATGGGGCGTTTGGGGCCAGAAACGCAAGCAGCTGCATGCTTGTCTCGAACAGCTTCAAGCCCTTCGAGCGACACCAATTTCAGCACAGGTGGTGGTCCTTGGCCAGCAGCGGGTGTAATAATTCCAAAGCCCAGCAGCGTAACAGATCAACCCACCAACCCTACCACTGCTGAAACAAATAAGCAACAGTACCCCAACCTTGAGCTTCAGCTCTCTACAGCCACTTCTATTGCGGCATCCAAGAATGATGTTGAAGACAAGGCACGCGAGCAGCTGAGGTTAGCCATGGCTGAGAAGGCTTTTGCTGAAGAGGCGAGGAAGCAAGCCAAGAGGCAGATCCAAGTTGCCGAGCTTGAGTTCAATAACGCCAAGAGAATAAGACAGCAAGCTCTAGCGGAACTCGACAAAGCCTATGCCTTGAAGGACCATGCAATCAAACAGATCAATTCAACCATGCTTCAAATCACTTGCCTCGCTTGCAAGCACCATTTTCAATCGCCAACCACCGCTCCCCCGGATGACAACTCTTTGTTCTTCACCTACATAACAACTGAACCTTCCCAAGTTCAAAAACATCGTGCCAAACCCATTCACTCTTAG 1149 0.5039 MLVNNSSPSSVPTSDPFSCAENATTTNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVKKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCDRCSKAYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNMGRLGPETQAAACLSRTASSPSSDTNFSTGGGPWPAAGVIIPKPSSVTDQPTNPTTAETNKQQYPNLELQLSTATSIAASKNDVEDKAREQLRLAMAEKAFAEEARKQAKRQIQVAELEFNNAKRIRQQALAELDKAYALKDHAIKQINSTMLQITCLACKHHFQSPTTAPPDDNSLFFTYITTEPSQVQKHRAKPIHS 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr6200g00002 382 MobiDBLite consensus disorder prediction 198 246 - -
Mupr6200g00002 382 FunFam protein indeterminate-domain 12-like 36 104 - -
Mupr6200g00002 382 MobiDBLite consensus disorder prediction 228 246 - -
Mupr6200g00002 382 MobiDBLite consensus disorder prediction 1 44 - -
Mupr6200g00002 382 Coils Coil 268 316 - -
Mupr6200g00002 382 MobiDBLite consensus disorder prediction 1 24 - -
Mupr6200g00002 382 Gene3D Classic Zinc Finger 119 195 - -
Mupr6200g00002 382 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Mupr6200g00002 382 SUPERFAMILY beta-beta-alpha zinc fingers 56 154 IPR036236 -
Mupr6200g00002 382 Gene3D Classic Zinc Finger 35 98 - -
Mupr6200g00002 382 MobiDBLite consensus disorder prediction 198 213 - -
Mupr6200g00002 382 SMART c2h2final6 134 161 IPR013087 -
Mupr6200g00002 382 SMART c2h2final6 98 128 IPR013087 -
Mupr6200g00002 382 SMART c2h2final6 57 79 IPR013087 -
Mupr6200g00002 382 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 16 331 IPR031140 -
Mupr6200g00002 382 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr6200g00002 Mupr-Chr6200 4239 5821 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr6200g00002 5 367 C2H2 Transcription Factor Family AT1G25250 57.480 2.80e-141 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mupr6200g00002 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr6200g00002 K25871 - gmx:100798167 580.096