Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr6172g00004 ATGAAGATTTTTCTTTATTTCCTTTGCTCTGTCATGGCAGGACTTGCACCTGAGGGGTCACAGTTTGATGGTCGTCAATATGATAACAAGATGAATGAGTTGCTTACAACTGATGGACAAGACTTCTTCACATCCTACGATGAGGTTTATGATAGTTTTGATGCTATGGGCTTGCAAGAGAATCTCCTGAGAGGCATATATGCATATGGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGAATAGTTCCATTCTGCAAGGGACTTGATGTTATACAACAGGCTCAGTCTGGAACTGGGAAGACAGCAACTTTTTGCTCTGGAATTCTTCAGCAACTTGAGTATAGTTTGACAGAATGCCAAGCCTTGGTTTTAGCACCAACTCGTGAGCTTGCTCAGCAGATTGAAAAGGTTATGCGGGCACTTGGAGATTATCTAGGTGTCAAGGTGCACGCTTGTGTGGGAGGTACCAGTGTTCGTGAAGACCAACGCATTCTATCAAGTGGTGTTCATGTTGTTGTTGGTACTCCTGGTCGCGTATTCGATATGCTGCGTAGGCAGTCACTTCGGCCAGATTACATCAAGATGTTTGTATTGGATGAGGCTGATGAAATGCTTTCCCGTGGTTTTAAAGATCAGATCTATGATATATTCCAGCTGCTTCCAACTAAGATTCAAGTGGGAGTTTTCTCTGCTACAATGCCTCCTGAGGCACTTGAGATCACAAGGAAGTTTATGAACAAACCTGTGAGGATCCTTGTGAAGCGTGATGAGCTCACCTTGGAGGGTATAAAGCAGTTTCATGTCAATGTTGAGAAAGAGGACTGGAAGCTGGACACACTGTGTGATCTTTATGAGACATTAGCTATCACTCAGAGTGTCATTTTTGTAAACACCAGAAGGAAAGTTGATTGGTTGACTGATAAGATGAGAAGCCGAGACCACACAGTCTCAGCAACCCATGGAGACATGGACCAGAATACCAGGGACATTATTATGCGTGAATTCCGTTCTGGGTCTTCCCGTGTCTTAATAACTACTGATCTTTTGGCTCGTGGTATTGATGTCCAACAAGTGTCTCTTGTTATAAATTATGATCTCCCTACACAGCCTGAGAACTATCTCCATCGTATTGGTCGTAGTGGAAGGTTTGGCAGGAAAGGTGTTGCCATCAACTTTGTTACGAAGGATGACGAGAAAATGCTGTTTGACATCCAGAAGTTTTATAATGTGATAATTGAGGAGCTGCCTTCAAATGTTGCTGAGCTTCTCTGA 1275 0.4322 MKIFLYFLCSVMAGLAPEGSQFDGRQYDNKMNELLTTDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLEYSLTECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPTKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEKEDWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDEKMLFDIQKFYNVIIEELPSNVAELL 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr6172g00004 424 FunFam Eukaryotic initiation factor 4A-III 259 424 - -
Mupr6172g00004 424 CDD SF2_C_DEAD 264 394 - -
Mupr6172g00004 424 FunFam Eukaryotic initiation factor 4A-II 39 258 - -
Mupr6172g00004 424 Pfam DEAD/DEAH box helicase 76 237 IPR011545 GO:0003676|GO:0005524
Mupr6172g00004 424 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 263 424 IPR001650 -
Mupr6172g00004 424 Pfam Helicase conserved C-terminal domain 277 385 IPR001650 -
Mupr6172g00004 424 CDD DEADc_EIF4A 55 253 - -
Mupr6172g00004 424 PANTHER RNA HELICASE 41 408 - -
Mupr6172g00004 424 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 51 79 IPR014014 GO:0003724
Mupr6172g00004 424 SMART helicmild6 304 385 IPR001650 -
Mupr6172g00004 424 Gene3D - 41 259 IPR027417 -
Mupr6172g00004 424 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 198 206 IPR000629 -
Mupr6172g00004 424 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 120 405 IPR027417 -
Mupr6172g00004 424 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 82 252 IPR014001 -
Mupr6172g00004 424 SMART ultradead3 70 267 IPR014001 -
Mupr6172g00004 424 Gene3D - 260 424 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr6172g00004 Mupr-Chr6172 38898 41675 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr6172g00004 12 424 Eukaryotic Initiation Factors Gene Family AT1G72730 87.440 0.0 760
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr6172g00004 K03257 - gmx:100786735 807.749