Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr6116g00005 ATGATGTCTCTTTTTGAGAATTTGACTTGTTCATATCATGTTATTTCAGATGCAATGTGGCAAATTAATTTAAGGTCAAGTGAAACAATGGAATCGGGACCTTATCCTGAGCATCCAGGAGAACCAGATTGTTCATATTACATTAGGACTGGCCTTTGTAGATTTGGAGCAACATGTCGATTTAATCATCCTCCTAACAGGAAGCTGGCTATTGCTGCTGCACGGATGAAAGGAACTTGCAAATTTGGAGCCACATGCAGGTTTCATCATCCTAGAGACAAGGCTGGGATTGCTGGAAGAGTTGCCTTGAATATTTTAGGCTATCCACTCCGCCCAAATGAGCCTGAATGTGCTTATTATTTAAGAACCGGACAATGTAAATTTGGGAACACTTGCAAATTTCACCATCCTCAACCAAACAATATGGTGCTTTCCATGCGAAGTTCTCCGGTTTATCCTACCGTCCATTCTCCAACTACACCAGGTCAGCAGTCATATGCGACAGGAATTACAAATTGGTCTAGTTCATCGTATATTCCTAGCCCACGTTGGCAAGGCCCTTCAAGTTATGCACCTTTAATTCTACCTCAGGGAATGGTTTCAGTGCCTGGGTGGAATGCGTACAGTGGTCAAATGGGATCAGACAGTCCACAGCAAACAATGGGAAATGGCCAAAGCTATGGAACTTCCCGGCAGAATGAACCAGCAAATGCAGGATCCCAGGGGGCATATTCTCAATTTCGTTCTGGGTCTGTTCCTGTAGGGTTCTATGCATTGCCAAGGGAGAACATATTTCCTGAGAGACCTGATCAGCCTGAATGCCAATTCTACATGAAGACTGGAGATTGCAAGTTTGGTGCAGTCTGTCGCTTCCATCATCCACGTGAAAGGATGATTCCTGCTCCTGACTGTGTTTTGAGTCCCATAGGCCTTCCTTTACGTCCTGGAGAGCCTTTGTGTGTCTTCTATTCGCGTTATGGCATATGCAAATTTGGCCCAAGTTGCAAGTTTGATCACCCAATGGGAGTCTTCACCTATAACATATCTGCATCACCTTCAGCTGATGCCCCAGGAAGGCGTATGTTGGGTTCTTCATCAGGAACTGCTGCATTAAATTTATCATCAGAAGGACTTGTTGAGTCAGGCTCAGCAAAGCCAAGGAGGCTTTCATTATCGGAGACTAGACAGATTCCTTCTGGTGATGATGACATTGATGAAGAGGGATAA 1227 0.445 MMSLFENLTCSYHVISDAMWQINLRSSETMESGPYPEHPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIAAARMKGTCKFGATCRFHHPRDKAGIAGRVALNILGYPLRPNEPECAYYLRTGQCKFGNTCKFHHPQPNNMVLSMRSSPVYPTVHSPTTPGQQSYATGITNWSSSSYIPSPRWQGPSSYAPLILPQGMVSVPGWNAYSGQMGSDSPQQTMGNGQSYGTSRQNEPANAGSQGAYSQFRSGSVPVGFYALPRENIFPERPDQPECQFYMKTGDCKFGAVCRFHHPRERMIPAPDCVLSPIGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMGVFTYNISASPSADAPGRRMLGSSSGTAALNLSSEGLVESGSAKPRRLSLSETRQIPSGDDDIDEEG 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr6116g00005 408 ProSiteProfiles Zinc finger C3H1-type profile. 268 296 IPR000571 GO:0046872
Mupr6116g00005 408 SMART c3hfinal6 73 92 IPR000571 GO:0046872
Mupr6116g00005 408 SMART c3hfinal6 268 295 IPR000571 GO:0046872
Mupr6116g00005 408 SMART c3hfinal6 314 341 IPR000571 GO:0046872
Mupr6116g00005 408 SMART c3hfinal6 111 138 IPR000571 GO:0046872
Mupr6116g00005 408 SMART c3hfinal6 38 65 IPR000571 GO:0046872
Mupr6116g00005 408 SUPERFAMILY CCCH zinc finger 114 139 IPR036855 GO:0046872
Mupr6116g00005 408 ProSiteProfiles Zinc finger C3H1-type profile. 314 342 IPR000571 GO:0046872
Mupr6116g00005 408 MobiDBLite consensus disorder prediction 210 244 - -
Mupr6116g00005 408 SUPERFAMILY CCCH zinc finger 271 297 IPR036855 GO:0046872
Mupr6116g00005 408 ProSiteProfiles Zinc finger C3H1-type profile. 111 139 IPR000571 GO:0046872
Mupr6116g00005 408 PANTHER PROTEIN PHOSPHATASE RELATED 27 360 - -
Mupr6116g00005 408 Gene3D - 266 351 - -
Mupr6116g00005 408 Gene3D - 70 149 - -
Mupr6116g00005 408 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 40 65 IPR000571 GO:0046872
Mupr6116g00005 408 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 77 92 IPR000571 GO:0046872
Mupr6116g00005 408 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 316 341 IPR000571 GO:0046872
Mupr6116g00005 408 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 270 295 IPR000571 GO:0046872
Mupr6116g00005 408 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 114 138 IPR000571 GO:0046872
Mupr6116g00005 408 Gene3D - 31 69 - -
Mupr6116g00005 408 MobiDBLite consensus disorder prediction 374 408 - -
Mupr6116g00005 408 SUPERFAMILY CCCH zinc finger 43 66 IPR036855 GO:0046872
Mupr6116g00005 408 ProSiteProfiles Zinc finger C3H1-type profile. 76 93 IPR000571 GO:0046872
Mupr6116g00005 408 SUPERFAMILY CCCH zinc finger 317 341 IPR036855 GO:0046872
Mupr6116g00005 408 ProSiteProfiles Zinc finger C3H1-type profile. 39 66 IPR000571 GO:0046872
Mupr6116g00005 408 FunFam CCCH type zinc finger protein 266 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr6116g00005 Mupr-Chr6116 30492 37104 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr6116g00005 19 405 C2H2 Transcription Factor Family AT3G02830 59.902 7.28e-164 463
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mupr6116g00005 zf-CCCH 4.9e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr6116g00005 - - gmx:100786261 813.913