Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr6099g00001 ATGAGTGTAAGGGGGATGCTACCATACCAGGATGTTGATTCGAGCTTGAGGGCCATGGCTGGTTCCGCCGAGGGTTTCGGGCGTCATGCCATTGGTGGCCTCCACGATGATGGTCCTGGCTCCCTTCGCCAAGGATGTCGTACCAAGGAACCCTTGTGGATTGTTTTTCAACTTTCTGGTACCATTCTTCTTTCTTCTTACCTTAGTGTCTCTTCTTATACCACTATTGATGGCAGAGGCCAGAGGATTAAATTGACTGGCAAGGGTTTGAGACTCAAAGAATGTCAACACATTATCGTATGCAATCTTGAGTTTGAGGGTGGTACGGGTCATGACGTCGATGGCATTCAAATCAAACCTAATTCTACCCACATTTGGATTGATCGATGCACACTTCGTGATTATGATGATGGCCTTATTGACATCACAAGACAAAGCACTGATATTACTGTCTCTAGATTATTTATTTTACACATTAGAGGAACTGAATCCGTTGGTGAAACGTGGAGCATTGTAATGGGTTACTTGGCTTTGTGGCAACAGCATGACAAGACCATGCTCATTGGAGCTGACCCGTCTCATGTTGGCGATAGATGCATTCGGGTTACCATTCACCATTGTTTCTTTGATGGAACACGGCAAAGACAACCTCGTGTGAGATTTGGAAAAGTTCATCTGTACAACAATTACACCAGAAACTGGGGGGTATATGCTGTTTGTGCTAGTGTGGAATCCCAGATATACTCCCAATGTAACGTATATGAAGCAGGAACTAAGAAAAAGACTTTCGAATTTTATACTGAGAAGGCAGCAGATAAGGAAGTGCAGAAGTCTGGGTTGATAATATCAGAAGGAGACATGTTTCTGAATGGTGCTCAGCCATGCTTGCTTACTGAAAAGAGAGAAGAGACGATGTTCCATCCTAGCGAATATTACCCAACATGGACGATGGAAGCAGCTCATCATTCTCTCAGAGATGTCCTCCAGTTATGTACAGGTTGGCAATCCATTTGTAGGCCAATTGATCATATGTCCTTTAATTAA 1044 0.4368 MSVRGMLPYQDVDSSLRAMAGSAEGFGRHAIGGLHDDGPGSLRQGCRTKEPLWIVFQLSGTILLSSYLSVSSYTTIDGRGQRIKLTGKGLRLKECQHIIVCNLEFEGGTGHDVDGIQIKPNSTHIWIDRCTLRDYDDGLIDITRQSTDITVSRLFILHIRGTESVGETWSIVMGYLALWQQHDKTMLIGADPSHVGDRCIRVTIHHCFFDGTRQRQPRVRFGKVHLYNNYTRNWGVYAVCASVESQIYSQCNVYEAGTKKKTFEFYTEKAADKEVQKSGLIISEGDMFLNGAQPCLLTEKREETMFHPSEYYPTWTMEAAHHSLRDVLQLCTGWQSICRPIDHMSFN 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr6099g00001 347 PRINTS Pollen allergen Amb family signature 31 56 IPR018082 -
Mupr6099g00001 347 PRINTS Pollen allergen Amb family signature 67 83 IPR018082 -
Mupr6099g00001 347 PRINTS Pollen allergen Amb family signature 215 234 IPR018082 -
Mupr6099g00001 347 PRINTS Pollen allergen Amb family signature 237 256 IPR018082 -
Mupr6099g00001 347 PANTHER PECTATE LYASE 18-RELATED 11 299 IPR045032 GO:0030570
Mupr6099g00001 347 Pfam Pectate lyase 68 253 IPR002022 -
Mupr6099g00001 347 Gene3D - 7 329 IPR012334 -
Mupr6099g00001 347 SMART amb_all 39 260 IPR002022 -
Mupr6099g00001 347 SUPERFAMILY Pectin lyase-like 20 319 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr6099g00001 Mupr-Chr6099 2017 4054 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr6099g00001 36 343 Polysaccharide Lyase AT3G55140 73.052 1.10e-172 480
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr6099g00001 K01728 - gmx:100802068 568.926