Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr6082g00002 ATGGGAAACAACCTGTGCGTGACAGTGAAGACCATAAGAAAGGGAAGCACAAAGGAAAGTAGTACCTCACCCACACTGAATCTGGACACCATCGTGGAAAACTACGTGCCCCCTCACCACATAAAGCCCGCCCCAGTCTACACCTGCACAATCTGCTGCGACTCGCGGCCCGTGTACGACACCTTCAGTCCCGAGGGGTGCAACCACTACTACTGCACCAAGTGCACGTTAAAGTACATAGTATCCAAGCTCCAGAGCAACGAGCTGAAGCCGGGCTGCCCCGAGGCGGGCTGCACGGGCCGCCTGGGCCCGGAGTTCTGCAAGCCCATGCTTCCCCCCTTTGTCCTGGGGTGGTGGGAGAGGGCGCTGTGCGAGGCAGTAATTCCCGACAAGGACAAGCTCTACTGCCCCTTCAAGGACTGCTCCACTCTTCTGTCCAACGACGCCAGCAATGGGACGGTCACCCGAGCCTCCTGCTGCCCGCACTGCAAGAGGAACATCTGCGTGCAATGCAGGGCGCCATGGCACGCCGAGATTAGCTGCGACAAGTTTCAGAAGTTGAGGGACAAGAACGACGACCTCATGCTCGATCTTGCCAAGAGAAGGAAGTGGAGACGCTGCCCCAATTGCAAGCATTATGTCGAGAAGAAACAAGGATGCGATGACATGCTTTGCAGCCACGGTCTTACCTTCCAAGTTAGGCTCTAA 708 0.5678 MGNNLCVTVKTIRKGSTKESSTSPTLNLDTIVENYVPPHHIKPAPVYTCTICCDSRPVYDTFSPEGCNHYYCTKCTLKYIVSKLQSNELKPGCPEAGCTGRLGPEFCKPMLPPFVLGWWERALCEAVIPDKDKLYCPFKDCSTLLSNDASNGTVTRASCCPHCKRNICVQCRAPWHAEISCDKFQKLRDKNDDLMLDLAKRRKWRRCPNCKHYVEKKQGCDDMLCSHGLTFQVRL 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr6082g00002 235 FunFam RBR-type E3 ubiquitin transferase 44 130 - -
Mupr6082g00002 235 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 25 225 IPR031127 GO:0004842|GO:0016567
Mupr6082g00002 235 Gene3D - 178 231 - -
Mupr6082g00002 235 ProSiteProfiles TRIAD supradomain profile. 45 235 IPR044066 -
Mupr6082g00002 235 SUPERFAMILY RING/U-box 45 130 - -
Mupr6082g00002 235 SUPERFAMILY RING/U-box 191 226 - -
Mupr6082g00002 235 Pfam IBR domain, a half RING-finger domain 125 181 IPR002867 GO:0008270
Mupr6082g00002 235 SMART ibrneu5 117 181 IPR002867 GO:0008270
Mupr6082g00002 235 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 45 131 IPR013083 -
Mupr6082g00002 235 ProSiteProfiles Zinc finger RING-type profile. 49 94 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr6082g00002 Mupr-Chr6082 4212 5101 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr6082g00002 48 227 C3H Transcription Factor Family AT2G19610 28.947 7.19e-19 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr6082g00002 K11975 - rcu:8259039 216.853