Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr6059g00003 ATGCCAGGGAAACCTGATACTGATGATTGGCGTGTGGAGCGAGGCCAGCAGATTCAGTTTCAGTCTTCCATTTACTCTCATCACCAGCCTTGGTGGCGTGGAATGGGGGAAAATGACTTCAAATCATCTTCAGTTGATCAGTTAAATGGTTCAATCGTTAATGTCATGCAGTCCGAGACCAGAGAAGGGTTAGCTGATGGGGTTGATTTCAGTAAGCTTAGACAGCCTTTGGTTTCTCCTTCACTGCCTAGAACTGATAAGTCAGGTGAAGGTGTTGCCAAAGAGTACCAAAGCGCCAAACATGCTGTGTCCTCAATCCCATTTACCGTGGACAAACACCTTGCTCCAAATCCCCAGATGGAACTTGTCGGTCATTCAGTTGTTTTAACATCTCCTTATTCAGATGCACAGTATGGTCAAATCTTGGCTACTTACGGGCAACAAGTTATGATAAACCCTCAGTTGTATGGAATGCATCATGCTAGAATGCCTTTGCCACTTGAAATGGAAGAGGAGCCTGTTTATGTCAATGCAAAGCAGTATCATGGTATTTTGAGGCGAAGACAGTCACGTGCCAAGGCTGAGCTTGAAAAGAAAGTAATTAAAAGTAGAAAGCCATACCTCCATGAATCTCGTCACCTACATGCCATGAGAAGAGCAAGAGGAAATGGGGGTCGCTTTCTTAACACAAAGCAGCTTGAAAATAACAATTCTGGTGCAAACCCCTCAACAAATTCACTTAACACTCAACATTTGCTCACCAACAATGAGAACGTAGGTTCATCAAATGTGTCACAGTCCACAGTTCAGGACATGCACAGAGTGCAGAGTTTCAATATTGGTTACCATTATGGAAATGGTCTTACAGCACTATACCATTCACAAGCAAATGGAAAAAAGGAGGGAGACTGCTTTGGTGAAGATGAAGGGCTTTATCTCATCCAACTTGTGATGCTGTATTGA 963 0.4341 MPGKPDTDDWRVERGQQIQFQSSIYSHHQPWWRGMGENDFKSSSVDQLNGSIVNVMQSETREGLADGVDFSKLRQPLVSPSLPRTDKSGEGVAKEYQSAKHAVSSIPFTVDKHLAPNPQMELVGHSVVLTSPYSDAQYGQILATYGQQVMINPQLYGMHHARMPLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIKSRKPYLHESRHLHAMRRARGNGGRFLNTKQLENNNSGANPSTNSLNTQHLLTNNENVGSSNVSQSTVQDMHRVQSFNIGYHYGNGLTALYHSQANGKKEGDCFGEDEGLYLIQLVMLY 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr6059g00003 320 PRINTS CCAAT-binding transcription factor subunit B signature 204 227 IPR001289 GO:0003700|GO:0006355
Mupr6059g00003 320 PRINTS CCAAT-binding transcription factor subunit B signature 173 195 IPR001289 GO:0003700|GO:0006355
Mupr6059g00003 320 Gene3D - 170 231 - -
Mupr6059g00003 320 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 172 227 IPR001289 GO:0003700|GO:0006355
Mupr6059g00003 320 ProSitePatterns NF-YA/HAP2 subunit signature. 175 195 IPR018362 GO:0003677|GO:0016602
Mupr6059g00003 320 ProSiteProfiles NF-YA/HAP2 family profile. 170 230 IPR001289 GO:0003700|GO:0006355
Mupr6059g00003 320 SMART cbf3 169 230 IPR001289 GO:0003700|GO:0006355
Mupr6059g00003 320 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 57 271 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr6059g00003 Mupr-Chr6059 23631 27605 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr6059g00003 29 262 CCAAT-HAP2 Transcription Factor Family AT5G12840 40.234 1.72e-44 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Mupr6059g00003 CBFB_NFYA 2e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr6059g00003 K08064 - gmx:100789738 473.781