Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr6044g00003 ATGTTGGCACTGCGCTGTCGACCCTGCCTTTCTCCTCTCTTCTCTGGCTGCATAACAATTAGAGTTTCCTCTTTCATCTCTTTCCCTTTCTCACCCTCTCCGTTTCTCTCCTACACCCCTCTCCGCGCCATGACAAAGCCACCCTCCGCCTTCGACGCCCTCATGTCCGGCGCCCGCGCCGCTTTCAAGAAGAAATCCCAACCGCAACCTTCCGCATCCCCCAGGAAAAGAAAATCCCATGACTCCACTTTCTCCCAAAACCCTAGCAAACTCAAACCCTCCGAATCCTCCTCCTCAGCCGAAGCCGTTCAACCGCTCATTAAGCCACAAGAAACCGCCGAGCGGAAGCCTCCGACAAAGGTCGGTCGCATGTCATCTTCTTCTGAGGTGAAGACCGCGGAGCTGAAGAAGCTAGTCCCGCTGCTGAAGAAGAAACCCTCGGAATTCGATCCCGCCTCGGCGGTTTCTTGGGAGAAGGGCCAACCCGTGCCCTTCCTCTTTCTCTGCTTGGCCTTCGACATGATTTCGAAAGAATCCGGAAGAATCGCCATCACTGACATAGTCTGCAATATGCTGAGGACCGTGATGCACGCCACGCCGGAGGATCTCGTTCTGGTCGTTTACCTCTCCGCAAACCGCATTGCTCCGGCGCATGCGGCGTTGGAATTGGGGTTGGGTGACGCTTCCATTTCCAAGGCGCTTGCTGAGGCGTATGGCAGGACCGAAGCGTGGATTAAGACTCAGTATCAGAAAAAAGGGGACTTGGGCTTGGTTGCCAAAGAGAGCCGTTCTTCGCAGTCTATGATGTGGAAGCCTGATGCATTGACTATTAGGAAGGTTTTCAATACTTTTCACCTTATTGCTAAGGAATCTGGAAAAGAGAGTCAAGAGAAGAAAAAGAATCATATTAAGGCACTTCTTGTTGCTGCAACTGACTGTGAACCTCAATATCTAATCCGTTTGCTACAGGTTGAAATTACAAAGTTGCGAATTGGCTATGCTGAGAAAACTCTCTTAGCTGCATTAGGCCAAGCTGCAGTATACACTGAAGAACACTCTAAACCGCCTCCTGAAATTCAGTCTCCTTTGGAAGAGGCTTCAGATATTGTTAAACAAGTCTATTCTGTTCTTCCTGACTACGACAAAATAGTATCTGCACTGCTTACGGAGGGTCTATGGATGCTCCCAAAGACATGTAAATTTACTCCTGGTATTCCAATTGGACCTATGCTGTCAAAGGCAACAAAGGGTGTATCTGAAATTCTAAATAAATTCCAGGGTGTGGAGTTTACCTGTGAATACAAATACGATGGAGAGCGTGCCCAGATACATTACATGGAGGATGGTTCAGTTGAGATTTACAGTAGAAATGCAGAACGGAACACTGGGAAGTTTCCTGATGTTGCTGCTGCAGTTTCAAGGTTAAAGAAAACAACTGTATCATCATTTATTCTTGATTGTGAAATTGTTGCATATGATCGTGCAGAACATACGATCCTTCCTTTCCAGAAACCTTTTGTGCTGGTAGTTGATCAAATTAAACAGTTTAATGGTCATGCATTGAAGCTTAGTTCTCGGGCTCGCAAGAATGTAGCTCTCGATAATGTAAAGGTTGATGTCTGCATATTTGCTTTTGATTTGTTGTATCTTAATGGCCAAGAGCTTCTTCAGGAAAACTTGAGAGTCCGCAGAGAGCATCTCTATGCCTCTTTTGAGGAAGAAACTGGATTTCTTCAATTTGCAACAACAATAACATCAAATGATGTAGAGGAAATACAGAAATTTCTTGACAAAGCTGTTGATGAAAGTTGTGAGGGATTAATAATTAAAACATTAAATGAGGATGCTACATATGAACCTTCCAAGCGATCGCTCAACTGGCTGAAACTGAAGAAAGATTACCTGGATAATGTAGGGGATTCACTAGATTTGGTACCTATTGCTGCTTTCCACGGTCGTGGGAAACGTACAGGAGTTTATGGTGCCTTTCTCCTTGCTTGCTATGACCAAAATAATGAAGAATATCAAAGTATTTGTAAGATAGGAACGGGATTCTCTGAAGAAATGCTTGAAGAACGTTCTTCTAGTCTTCGTTCTAAAGTGATTCCCAAGCCAAAGGCATACTATCGATATGCAGAAACAATCCATCCTGATGTCTGGTTTGAAGCCAGCGAGGTGTGGGAGGTGAAAGCTGCAGACCTGACCATTAGCCCTGTTCACCGTGCTGCAGTGGGCATAGTAGATTCGGACAAGGGCATATCTCTTCGATTTCCACGACTAGTTCGAATTCGGCCTGACAAAGATCCTGAACAGGCCTTAACATCTGAAGAGGTTGCTGAAATGTATAATGCTCAAAAACACAATCAGACAAACAACCAAGATGATGATGATGAAGAAGACGATTGA 2406 0.4526 MLALRCRPCLSPLFSGCITIRVSSFISFPFSPSPFLSYTPLRAMTKPPSAFDALMSGARAAFKKKSQPQPSASPRKRKSHDSTFSQNPSKLKPSESSSSAEAVQPLIKPQETAERKPPTKVGRMSSSSEVKTAELKKLVPLLKKKPSEFDPASAVSWEKGQPVPFLFLCLAFDMISKESGRIAITDIVCNMLRTVMHATPEDLVLVVYLSANRIAPAHAALELGLGDASISKALAEAYGRTEAWIKTQYQKKGDLGLVAKESRSSQSMMWKPDALTIRKVFNTFHLIAKESGKESQEKKKNHIKALLVAATDCEPQYLIRLLQVEITKLRIGYAEKTLLAALGQAAVYTEEHSKPPPEIQSPLEEASDIVKQVYSVLPDYDKIVSALLTEGLWMLPKTCKFTPGIPIGPMLSKATKGVSEILNKFQGVEFTCEYKYDGERAQIHYMEDGSVEIYSRNAERNTGKFPDVAAAVSRLKKTTVSSFILDCEIVAYDRAEHTILPFQKPFVLVVDQIKQFNGHALKLSSRARKNVALDNVKVDVCIFAFDLLYLNGQELLQENLRVRREHLYASFEEETGFLQFATTITSNDVEEIQKFLDKAVDESCEGLIIKTLNEDATYEPSKRSLNWLKLKKDYLDNVGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDQNNEEYQSICKIGTGFSEEMLEERSSSLRSKVIPKPKAYYRYAETIHPDVWFEASEVWEVKAADLTISPVHRAAVGIVDSDKGISLRFPRLVRIRPDKDPEQALTSEEVAEMYNAQKHNQTNNQDDDDEEDD 801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr6044g00003 801 Pfam ATP dependent DNA ligase domain 409 631 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Mupr6044g00003 801 FunFam DNA ligase 438 581 - -
Mupr6044g00003 801 CDD Adenylation_DNA_ligase_I_Euk 398 634 - -
Mupr6044g00003 801 Pfam DNA ligase N terminus 164 342 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Mupr6044g00003 801 CDD OBF_DNA_ligase_I 639 784 - -
Mupr6044g00003 801 MobiDBLite consensus disorder prediction 61 129 - -
Mupr6044g00003 801 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 433 441 IPR016059 GO:0003909
Mupr6044g00003 801 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 368 632 - -
Mupr6044g00003 801 Gene3D - 419 635 - -
Mupr6044g00003 801 MobiDBLite consensus disorder prediction 779 801 - -
Mupr6044g00003 801 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 64 799 - -
Mupr6044g00003 801 ProSiteProfiles ATP-dependent DNA ligase family profile. 533 669 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Mupr6044g00003 801 Pfam ATP dependent DNA ligase C terminal region 656 767 IPR012309 GO:0003910|GO:0006281|GO:0006310
Mupr6044g00003 801 Gene3D DNA ligase/mRNA capping enzyme 438 581 - -
Mupr6044g00003 801 FunFam DNA ligase 141 411 - -
Mupr6044g00003 801 ProSitePatterns ATP-dependent DNA ligase signature 2. 605 631 IPR016059 GO:0003909
Mupr6044g00003 801 MobiDBLite consensus disorder prediction 84 105 - -
Mupr6044g00003 801 FunFam DNA ligase 636 795 - -
Mupr6044g00003 801 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 147 400 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Mupr6044g00003 801 Gene3D - 142 411 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Mupr6044g00003 801 SUPERFAMILY Nucleic acid-binding proteins 639 785 IPR012340 -
Mupr6044g00003 801 Gene3D - 636 799 IPR012340 -
Mupr6044g00003 801 NCBIfam ATP-dependent DNA ligase 222 782 IPR000977 GO:0003910|GO:0005524|GO:0071897
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr6044g00003 Mupr-Chr6044 17291 24562 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr6044g00003 1 796 Core DNA Replication Machinery Family AT1G08130 62.822 0.0 1017
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr6044g00003 K10747 - gmx:100783155 1178.31