Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr6040g00003 ATGAGTGGGTCAATTGATTATGATATCCACAGAGACACACACACACTATTGGCTTTTCTCCGTCTTCCTTCCCTCTCTTTTTCTGCTCCTTACTGGAAACGCTGCTTAGTGCTTCTCGCGGTTGTGAAGCATAGGGTGATGGACGGTGGAGCGCAGTACAACCCTCGTACGGTGGAAGAGGTTTTCCGGGACTTCAAGGGCCGTAGAGCCGGCATGATCAAGGCTCTCACCACTGAAAAGGATAATCTTTGTCTGTACGGATTCCCCAATGAGCAATGGGAAGTTAATTTACCTGCGGAAGAAGTTCCTCCGGAACTTCCTGAGCCTGCATTGGGCATAAACTTTGCTAGGGATGGGATGCAAGACAAGGACTGGCTGTCTTTGGTTGCCGTTCACAGTGATGCATGGTTACTTGCAGTTGCTTTCTACTTTGGAGCACGGTTTGGATTTGATAAAGCTGACAGGAAACGCCTGTTCACCATGATTAATGATTTACCGACAATATTTGAGATTGTGACTGGAAGTGCAAAAAAACAGCCCAAGGAAAAGTCATCCATTTCAAACCACACTAGCAACAAATCGAAACCCAGTTCAAAAGGGCGAGGATCTGAATCAGGGAAGTATTTGAAGCAAACAAAGGACGAGGAGGATGAGGTATTGGATGAAGAAGTTGAGGAGGAGCACGGGGAGACACTGTGTGGTGCATGTGGGGAGAACTATGCATCTGATGAGTTCTGGATTTGTTGTGACATATGTGAGAAGTGGTTCCATGGCAAGTGTGTGAAGATCACTCCTGCAAGGGCCGAGCACATTAAGCAATATAAGTGCCCATCATGCAGCAATAAGAGAGCACGGCCATGA 861 0.4704 MSGSIDYDIHRDTHTLLAFLRLPSLSFSAPYWKRCLVLLAVVKHRVMDGGAQYNPRTVEEVFRDFKGRRAGMIKALTTEKDNLCLYGFPNEQWEVNLPAEEVPPELPEPALGINFARDGMQDKDWLSLVAVHSDAWLLAVAFYFGARFGFDKADRKRLFTMINDLPTIFEIVTGSAKKQPKEKSSISNHTSNKSKPSSKGRGSESGKYLKQTKDEEDEVLDEEVEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr6040g00003 286 ProSitePatterns Zinc finger PHD-type signature. 233 279 IPR019786 -
Mupr6040g00003 286 PANTHER CPG BINDING PROTEIN 54 285 IPR045104 GO:0006355|GO:0042393
Mupr6040g00003 286 CDD PHD_AL_plant 232 282 IPR044104 -
Mupr6040g00003 286 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 223 281 IPR013083 -
Mupr6040g00003 286 Pfam Alfin 57 173 IPR021998 GO:0006355|GO:0042393
Mupr6040g00003 286 ProSiteProfiles Zinc finger PHD-type profile. 230 282 IPR019787 -
Mupr6040g00003 286 FunFam PHD finger alfin-like protein 225 281 - -
Mupr6040g00003 286 Pfam PHD-finger 233 282 IPR019787 -
Mupr6040g00003 286 SMART PHD_3 232 280 IPR001965 -
Mupr6040g00003 286 SUPERFAMILY FYVE/PHD zinc finger 226 283 IPR011011 -
Mupr6040g00003 286 MobiDBLite consensus disorder prediction 179 221 - -
Mupr6040g00003 286 MobiDBLite consensus disorder prediction 179 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr6040g00003 Mupr-Chr6040 8905 11744 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr6040g00003 47 285 Alfin-like Transcription Factor Family AT3G42790 70.916 1.70e-111 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Mupr6040g00003 Alfin 6.5e-56 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr6040g00003 K26274 - gmx:100500110 451.055