Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr6036g00002 ATGCCTGTTGTCACAGACACAACAACACCAACAGTGGGAGAACACATCAAATGGAGAAGACCCAGAAACCAATTCAGCCACCACCATCACCACCACCAACCCATTTCAGAAACAGATCCAAACCCTCAAATCCCTTCCATAATCCAATCCACTAGGTGCAAGTCCACCATTTCCTCCCTGCTCCTCTCCACATTCTCCAACAACACCTCCTCCAATGACACCCCCACCATCAATGGCAGTGCCAAGAGCAGGAAAAAAAGCAACTTTTCTGCAGCAACCTTCAGAGGGTTGGGGTGCACAGCCGGCGCGTCGCAGCAGGTGTCGGTGCCGGCGGTGATTCGCACCTCCGCTGACTGGCAAGGGAAGAAAACCAGAAAAAAGAAGCACAAGAGAAACAGCAGCAGCAAGAACAAGGGTTTCCATGGTGGGGTTCTAGAGGGTTCGAATCCTGGGTGTGTGGATTTTCAAGATGTTTGGTGTGGCCCTGGAATTGGGTTCTCAGCAGATGCTGCTGCCTCTGTTGATTGTGTTGTGACAAGGAAGAATGTCTCTGCAAGAGGCAAAATTGATGTGGACAAGATGACTCACAGGGAGCGATCATCGTATGTGGGAAGGCGCACGGAAACCTTCACTTTTCTGGACACTGATTCTGACATTTTCACACCACGCTCTGTCTCTGACTCTTATGGAACTGCAACATACTATCGTCATGTTAGAGATCCTTCCTCTGATGGTTTTGCTGAGATAATGATGCTTCAAGGGAGTCTACTAATGGGTGGACAATTAAACTCACATGATCAATTCAGAGACTGGAGACTTGATGTTGATAACATGTCATATGAGCAATTGTTAGAGCTTGGTGAGAGAATTGGTCATGTGAACACTGGACTCAAGGAAGATGAGATGGGACGGAACATAAGAAAGACTAGGCTTCAATTTTGGGATGATACATTAAAACATCAAATAGATAAAGAGTGCAGCATTTGTCAGGAGGAGTATGAAGCAGGTGATGAGCTGGGGAGGCTAAATTGCGAACACAGCTACCACTTTGTGTGTATAAAACAATGGGTTGCACAAAAAAATTTCTGCCCAGTATGTAAGCAACAAGTTGCAACTCGACGCTGA 1125 0.4667 MPVVTDTTTPTVGEHIKWRRPRNQFSHHHHHHQPISETDPNPQIPSIIQSTRCKSTISSLLLSTFSNNTSSNDTPTINGSAKSRKKSNFSAATFRGLGCTAGASQQVSVPAVIRTSADWQGKKTRKKKHKRNSSSKNKGFHGGVLEGSNPGCVDFQDVWCGPGIGFSADAAASVDCVVTRKNVSARGKIDVDKMTHRERSSYVGRRTETFTFLDTDSDIFTPRSVSDSYGTATYYRHVRDPSSDGFAEIMMLQGSLLMGGQLNSHDQFRDWRLDVDNMSYEQLLELGERIGHVNTGLKEDEMGRNIRKTRLQFWDDTLKHQIDKECSICQEEYEAGDELGRLNCEHSYHFVCIKQWVAQKNFCPVCKQQVATRR 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr6036g00002 374 SMART ring_2 326 366 IPR001841 -
Mupr6036g00002 374 MobiDBLite consensus disorder prediction 23 46 - -
Mupr6036g00002 374 SUPERFAMILY RING/U-box 325 372 - -
Mupr6036g00002 374 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 303 373 IPR013083 -
Mupr6036g00002 374 ProSiteProfiles Zinc finger RING-type profile. 326 367 IPR001841 -
Mupr6036g00002 374 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 23 371 IPR045191 GO:0061630
Mupr6036g00002 374 MobiDBLite consensus disorder prediction 121 136 - -
Mupr6036g00002 374 FunFam E3 ubiquitin-protein ligase rnf12-A 293 372 - -
Mupr6036g00002 374 Pfam Ring finger domain 324 367 IPR001841 -
Mupr6036g00002 374 MobiDBLite consensus disorder prediction 118 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr6036g00002 Mupr-Chr6036 12432 16694 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr6036g00002 12 281 C3H Transcription Factor Family AT1G73760 42.123 6.93e-55 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr6036g00002 - - vum:124831997 642.114