LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mupr6012g00001	ATGGCAACCGGTTCCCGATTGTTCCTGATTCAAGCTACGAGGCCCATTATCGGGAAAAACGTGTCGTTGATGTCCTCGTGTTCAGGTCGCACGGTTGAAGCGTGCGAGTCATCATCTTCCCCCGGGCGCGCGGAGGAAGAGTCCCGAAACGTGAGGGTTTTGGCGTGGTGGGACTTCAAGAATTGCAACGTGCCTGCGGGTTTCGATGCTTCCAAAGTAGCCCCCGCGATAATGGAGGCAGTGAGAGCCAACGGGATTAAAGGCCCTCTCAACATCACCGCTTTCGGCGACGTTCAGCAACTCTCCAGGCTCCACCAGGAAGCACTTGCGTATACCGGTGTTCGCTTCTCCCACGTCTCCAACGATGAAAGGAATAGTGCCGATATTCTTGTTGACCTAATGTATTGGGTTTCCCAAAACCCTCCACCCGCGCATCTCTTTTTGATTTCTGGTGATAGAGACTTTGCTGGCGTATTGCATAGGTTGAGAATGAGTAACTACAATATCTTGCTTGCTACGCCAGAGAGGGCTCCAAGTGTTCTCCACAGTGCCGCCACTATAGCGTGGCAGTGGAATTCCTTGCTTAAGGGAGAGAATCTTATTGGAAAACATTTCAACCACCCTCCTGATGGGGCTTTTGGTTCTTGGTATGGAAGCTACAAGGCGGCTCGTCTTGAAAAGCCTCAACAAGCTACATGTTTACCCAATGTGGAGGTCCATGAGCCTTCCTCAGGTTCAGTTCCAAAGTCAGTTGTGAGGCAGGTTTGGCATATATTGAGTTTGCATCCCAAAGGGATAGGCATTACCGAACTTCGCACTGAGTTGGCAAAATGTGATGTGCCTTTGGATAGAAGTTTGTTTGGACATAAAAAGTTTTCCCGCTTTCTGTTATCGTTGCCGCGTGTACAGCTTCAGCCTGTAGGTGATGGTAATTTTAATGTACATTTGGTTCATTCAGAATTCCCTGAATCTTTTGAGAGCATTTCTGTGGATTCAAAAATGTCTGCTGTTAAGAATGAGGAGAAAGGATGTGTAGTGTCTCCAAAGCTAAATGGTGAGGAAAAAAGTAAGGTTAGATATTCAGATGAGACATCCTCAATTGCCTCGATCCTTGAAAGGGGTTTGGATGACGATTTAAAATCATTCCAACCGGGGCCTTCACAAGGGAGACCTGTTGGGAAATATGTGGATGGGAAATCATCATCTCCTGTATTGGTTGAAAGACATGTTTGTCAGCCCCCAAATGAGTTGCGAAAATCTTCTGTGGCTTGCAACAAAGTTGTGGATGTAGCTGATGCACAAAAGTCAGAGACTCAACTGCTACCCAAGGACAACAAAGATTCCAAAGCTAAGATGGATTCCTTAAAAATGACATCTCAAAAATCATCTGATAATGACACTGTTAGGTCCGAGGATGGAAACGGTCACACAATGGTGGAAAACAATGCTATCGCAAATTATGAGTCTGGAAATTCTGAAGCAAAGAACAAATGTGAGAATCCAGCTAGAAAGGATGTTGATGAAGTGTTTTGCGGCCCATCTTCTTCACCAGTTGATGGCTCTCTGGATATCCAAAGACCTGGTGGAAGTGCTGAAACTAAAAGCAGAAGTCCAACATTGTTTAGCTGGATTAGAAGTTGGTGGCCATTTGGGAAAAGCAATGCAAAGTATGATGACTTGACTGCTCAGCAGGACAAGGGGGTTAGTCATGTTGAGGATTCCATGTTATCCAAACTGGACCAGACTGTTAGTCAATTTGAAGAGCCCAAGTTACCAGAACTGGATCAGAATGTTAGTCATTCCAGAAAGCCTGAGTTATTTTCTAGTTCTTCCTTTTGGAATGAAGTGGAATCTTTTATTTTTGCACCCAAAGGATCACTTCTTTTCTCCCAGTCAAGAAGCAGGGAGGATGTGGTGCATAAATTACAAAATGACGGACCCCTGGTTCTTAGATCACTCCCCCCAAAAGACATCCTTCAATTGGTAGAATTGTTGATAGCAGATAAAAATTGGTTGGAGGAAAGCCCCTCCCAAACATTTCCTTTTAAGCTGACTCAACCGGCCCAAAAGAATTCATTGATGGACCAATCTCATGCCGCAAATGGTTTGAGATCTCTCTTTCTAAGTAGAACATCACAATCGAACTTGCAAAAATCATTAGAACATGATGTGGAGAAAGACAATCAGAGTATTTCTCATACTCGAGTTTCTGCACCAGCAACTGAAACAAAACATAGCGAGAGATCTAGAAATGATATATTAGAAGACTGTCAGAAACTCGTGAGTGAGATACTGAGGGAACACCCAGAGGGATATAATATTGGCTCTTTCCGAAGACAATTTGTTGGTAGGTATGGCTATCATCTTGATATACAGAAGCTTGGTTATCAAAAGTTGGCAGCCTTGCTACAGATAATGCCTGGGGTTAAATTAGAGTCCACTTATATTTTTCCTTCTGTTCCTGCTGTCTGTGATTCTGACTTGGAAACTTCTATCCTCAAAACTCAAGCAACCACTGATAGTCACGCAGCTTCCAACTCAAACAGTGAATTATCTGAGTCAGCCCTGAAAAATGATAACATGGAATCTCCATGGGAGGAGTTAGGTCCTGTTTCTTTAAAAAATTCCAACAAGAGTGATTTGGAATCAAAGTCAAGTCAGAAAGCTATAGAACTGGATACATCAAAATCAAAACATCCTGATTATGAATCTGTCATCTCAGATGATGATGATTCTTCATCTGAAGGAGATAGCTCTTGTCTAACTCAATCAGAAGAGCAAAGAAAGCCAAAATGTAATGAACAAGACAGTTCTTTTTGGCAAGCTATGGATTTGTGGCACAGCAGCAAGGAAGGAGAGAATAGTGTCAAGAAGTTAGACAATGTTGACAGCTTGGGTGTTTCTCTGGCTGATATTTTAGATTCATCCACTGGGTCGACCAGGGATACCCTTTCCAAAAGTCCTTCATCGAATTACAGAGAGAACTGTGTCAAGAAGTCAGACAATGTTGACAGCTTGGATGTTTCTCTGGCTGATATTTTTAATTCATCCACTGAGTCGACCAGGTGTACCCTCTCCAAAATTCCTTCACCAAATTACAGAGAGAAGCAAAGATCACATAAGAACTATTCCTTTGTTGCCGATCCAGTCTTACCTAACACAGACAAGCTGGTTGATGGCTTCAAGAAAGCAGATGAGTCAAAGATGCAAAACTGA	3216	0.4325	MATGSRLFLIQATRPIIGKNVSLMSSCSGRTVEACESSSSPGRAEEESRNVRVLAWWDFKNCNVPAGFDASKVAPAIMEAVRANGIKGPLNITAFGDVQQLSRLHQEALAYTGVRFSHVSNDERNSADILVDLMYWVSQNPPPAHLFLISGDRDFAGVLHRLRMSNYNILLATPERAPSVLHSAATIAWQWNSLLKGENLIGKHFNHPPDGAFGSWYGSYKAARLEKPQQATCLPNVEVHEPSSGSVPKSVVRQVWHILSLHPKGIGITELRTELAKCDVPLDRSLFGHKKFSRFLLSLPRVQLQPVGDGNFNVHLVHSEFPESFESISVDSKMSAVKNEEKGCVVSPKLNGEEKSKVRYSDETSSIASILERGLDDDLKSFQPGPSQGRPVGKYVDGKSSSPVLVERHVCQPPNELRKSSVACNKVVDVADAQKSETQLLPKDNKDSKAKMDSLKMTSQKSSDNDTVRSEDGNGHTMVENNAIANYESGNSEAKNKCENPARKDVDEVFCGPSSSPVDGSLDIQRPGGSAETKSRSPTLFSWIRSWWPFGKSNAKYDDLTAQQDKGVSHVEDSMLSKLDQTVSQFEEPKLPELDQNVSHSRKPELFSSSSFWNEVESFIFAPKGSLLFSQSRSREDVVHKLQNDGPLVLRSLPPKDILQLVELLIADKNWLEESPSQTFPFKLTQPAQKNSLMDQSHAANGLRSLFLSRTSQSNLQKSLEHDVEKDNQSISHTRVSAPATETKHSERSRNDILEDCQKLVSEILREHPEGYNIGSFRRQFVGRYGYHLDIQKLGYQKLAALLQIMPGVKLESTYIFPSVPAVCDSDLETSILKTQATTDSHAASNSNSELSESALKNDNMESPWEELGPVSLKNSNKSDLESKSSQKAIELDTSKSKHPDYESVISDDDDSSSEGDSSCLTQSEEQRKPKCNEQDSSFWQAMDLWHSSKEGENSVKKLDNVDSLGVSLADILDSSTGSTRDTLSKSPSSNYRENCVKKSDNVDSLDVSLADIFNSSTESTRCTLSKIPSPNYREKQRSHKNYSFVADPVLPNTDKLVDGFKKADESKMQN	1071

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mupr6012g00001	1071	MobiDBLite	consensus disorder prediction	513	535	-	-
	Mupr6012g00001	1071	PANTHER	LIMKAIN B LKAP	39	764	IPR024768	GO:0005777\|GO:0010468
	Mupr6012g00001	1071	CDD	LOTUS	754	809	-	-
	Mupr6012g00001	1071	MobiDBLite	consensus disorder prediction	435	476	-	-
	Mupr6012g00001	1071	Pfam	OST-HTH/LOTUS domain	754	812	IPR025605	-
	Mupr6012g00001	1071	Pfam	OST-HTH/LOTUS domain	257	312	IPR025605	-
	Mupr6012g00001	1071	Pfam	NYN domain	53	185	IPR021139	GO:0004540
	Mupr6012g00001	1071	CDD	PIN_limkain_b1_N_like	52	174	-	-
	Mupr6012g00001	1071	MobiDBLite	consensus disorder prediction	837	934	-	-
	Mupr6012g00001	1071	Gene3D	-	246	321	IPR041966	-
	Mupr6012g00001	1071	MobiDBLite	consensus disorder prediction	439	454	-	-
	Mupr6012g00001	1071	ProSiteProfiles	OST-type HTH domain profile.	753	827	IPR025605	-
	Mupr6012g00001	1071	Gene3D	-	748	815	IPR041966	-
	Mupr6012g00001	1071	ProSiteProfiles	OST-type HTH domain profile.	247	320	IPR025605	-
	Mupr6012g00001	1071	MobiDBLite	consensus disorder prediction	884	906	-	-
	Mupr6012g00001	1071	MobiDBLite	consensus disorder prediction	718	743	-	-
	Mupr6012g00001	1071	MobiDBLite	consensus disorder prediction	378	399	-	-
	Mupr6012g00001	1071	MobiDBLite	consensus disorder prediction	837	859	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mupr6012g00001	Mupr-Chr6012	2243	5812	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mupr6012g00001	44	197	C2H2 Transcription Factor Family	AT5G61190	42.949	1.25e-34	141

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mupr6012g00001	-		-	gmx:102661134	1541.94