Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr6008g00002 ATGGGCATCAAGGATCTTCTGAGGTTCATGAAACCTTACACTGAACCTGTCCACATCAAGAAATACGCTGGAAAGCGCGTGGGTATTGACGCGTATTCATGGCTTCACAAAGGGGCTTATTCGTGTAGTATGGAGCTTTGTCTCGATTCTGATGGTGAAAAGAAATTGCGGTACATTGAATATTTTATGCATCGAGTGAACTTGCTTCGCTTCTATAAAATAACCCCGGTTGTTGTTTTCGATGGCGGCAACATTCCTTGCAAGGCAGCAACTGAGGAAGAGAGGAACAGGCATTACTTGTCCCTTGGACTAGGTGAATCTTGTTTCTCACTAAAAAGAAGGGCTAATCGTGATTTGGCAATGGCGAAGCTCAAAGAAGGGAATGTTGGTGCAGCTTCAGAGTTCTTCCAGAGAGCAGTGAATATTACTCCCCTTATGGCACATAAGTTAATTCAGACCCTGAATTCAGAGAACATTGAGTTCGTTGTAGCTCCATATGAAGCAGATGCTCAGTTAGCGTACCTGTCTCACCTTGGGGTAGAAAATGGTGGAGTTGCAGCAGTGATCACAGAAGATAGTGATCTGATAGCATATGGCTGTCCAGCTATTATTTTTAAGATGGACCGTCACGGGAAAGGAGAAAGAATAGAGTTAGAGAAGGTTTTGTCTGCTGAGTCTGGTAGACCTTCATTTCGGAGTTTCAATCTGAAACTCTTCACAGGTATGTGTGTCTTAGCTGGTTGTGATTTTCTTCCATCTGTTCCTGGAATCGGTATTGCCCGAGCTCATGCCTTAGTTTCCAAGTATCAGAATCTAGATCGTATATTGTCTGTTCTTAAGCTTGAGAAAGCCGACCAAATGCCTGACGATTATGCCAAATCCTTTCAAGAGGCTGTAGCGGTTTTTCAGCATGCTCGAATATATGATACCAATGCTAAAGTGCTCAAGCACATGAAGCCTCTTCCACAGAATTTTCTTGAGTCACTTGATGGAAAGCTTGATTTCTTGGGACCTCCAAATGCAATTAGAGAAATTCCTCCATCTATAGTAAAAGCAATAGCTGAAGGAAACTTGAACCCATCAACTAAGAAAGCCTTTGATAAATCTGAATCCTCTAGATTTCCTCTGCACCCCATTGATCTCCAAAGCCTTGATCAAGTCCAGAAAGCTGAAGTTCCTGAACCATCTAGACAGGAGAATAATAGCTTTTCTATAATTGCCTCCCATTACACCAGAGAAAATTGTACAGGCAAGCTCTCAGATGAAGATAAGTATTCCAAAGAAGCATTGACACTTCAGAAACTAATCATGCCATTGGGAAAAAAGGGAACAGAAGAAAAGACCATTATATCTGATGACACTCCTTTGAAGGTTCCAGACAACAATCCATTCAGGATAAGAAAAAATGAGGAAACTTATCAGCCAAAGGACACTGCTGAAAAGGTTTCTGTTGCAAGCAGCATGGAATATACTGACTTATGCATGTCCCCAGATAACTTTCAAGAAGAGGGGTCTGAGAATCTATCAAGGAAAAGGAAATCTCACAACATTTTCTCAGATAAAGTTGAAGCCACTTGTGAACCGGTTTCAGGAGTGACTGAAGTAGAAAAATCTGATGTTGTATGCATAACTATGGAATCCCCAGAAAGTATAAATTCTGAAAATAAGAAAATTGCTGATTTGAAAGGAAGAAGTGAAAGTAAAAAGAAATCCAAGAAAACGGGAAGTAACAACAGAACTCTTTTGAATTTCTTTTCTAGAGTGTAA 1767 0.4069 MGIKDLLRFMKPYTEPVHIKKYAGKRVGIDAYSWLHKGAYSCSMELCLDSDGEKKLRYIEYFMHRVNLLRFYKITPVVVFDGGNIPCKAATEEERNRHYLSLGLGESCFSLKRRANRDLAMAKLKEGNVGAASEFFQRAVNITPLMAHKLIQTLNSENIEFVVAPYEADAQLAYLSHLGVENGGVAAVITEDSDLIAYGCPAIIFKMDRHGKGERIELEKVLSAESGRPSFRSFNLKLFTGMCVLAGCDFLPSVPGIGIARAHALVSKYQNLDRILSVLKLEKADQMPDDYAKSFQEAVAVFQHARIYDTNAKVLKHMKPLPQNFLESLDGKLDFLGPPNAIREIPPSIVKAIAEGNLNPSTKKAFDKSESSRFPLHPIDLQSLDQVQKAEVPEPSRQENNSFSIIASHYTRENCTGKLSDEDKYSKEALTLQKLIMPLGKKGTEEKTIISDDTPLKVPDNNPFRIRKNEETYQPKDTAEKVSVASSMEYTDLCMSPDNFQEEGSENLSRKRKSHNIFSDKVEATCEPVSGVTEVEKSDVVCITMESPESINSENKKIADLKGRSESKKKSKKTGSNNRTLLNFFSRV 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr6008g00002 588 CDD PIN_EXO1 1 222 IPR044752 GO:0046872
Mupr6008g00002 588 FunFam Exonuclease 1, putative 1 227 - -
Mupr6008g00002 588 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 542 IPR006084 -
Mupr6008g00002 588 MobiDBLite consensus disorder prediction 552 578 - -
Mupr6008g00002 588 Gene3D - 233 305 - -
Mupr6008g00002 588 MobiDBLite consensus disorder prediction 553 573 - -
Mupr6008g00002 588 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 235 367 IPR036279 -
Mupr6008g00002 588 SMART xpgineu 155 227 IPR006086 GO:0004518
Mupr6008g00002 588 Gene3D - 1 226 - -
Mupr6008g00002 588 Pfam XPG I-region 158 249 IPR006086 GO:0004518
Mupr6008g00002 588 ProSitePatterns XPG protein signature 2. 158 172 IPR019974 GO:0016788
Mupr6008g00002 588 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 154 171 IPR006084 -
Mupr6008g00002 588 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 239 254 IPR006084 -
Mupr6008g00002 588 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Mupr6008g00002 588 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 76 95 IPR006084 -
Mupr6008g00002 588 FunFam exonuclease 1 232 305 - -
Mupr6008g00002 588 SUPERFAMILY PIN domain-like 2 249 IPR029060 -
Mupr6008g00002 588 SMART xpgn3 1 102 IPR006085 GO:0004518
Mupr6008g00002 588 Pfam XPG N-terminal domain 1 97 IPR006085 GO:0004518
Mupr6008g00002 588 CDD H3TH_FEN1-like 239 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr6008g00002 Mupr-Chr6008 11001 15510 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr6008g00002 1 303 Core DNA Replication Machinery Family AT5G26680 25.633 1.03e-12 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr6008g00002 K10746 - gmx:100817932 930.243