Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr5959g00005 ATGGATGGGAGAGAAGCTATGGCATTCTCTGGTGACTCAGGTTCATATTACATGCATAGAGGAGGGGTTGGAGTGTCTGGCTCTGGACCACATAGTGGGGGAGGGGGGTTCCAAGCAGCCCCTGGGTTCAGGGCTTTGTCAAACACTGGCATTCAAGCTGAGTCAAATGCAAGGGGTCCGGGTGGTGGTGGTTCTGCTTCCTCATTTTCAGTAGAGCCTCCTCAGGCTCATGCCAATTTTAACCATGGCATTGGCATTGGCATTGGGACACCTTCAAGTGACCCTGTGAAGAAGAAAAGAGGGAGGCCTCGTAAATACGGTGTTGATGGAGCAGTTTCTTTGAGACTGTCTCCAATGTCTGCCCCTGCTAACTCCACCCAGTGTGAAAGTGCAATCACCCCTTCTCCTAAAAAGGGTAGAGGGCGCCCTCCTGGATCTGGAAGGAAGCAGCAGCTTGCCGCTTTAGGTGAATGGATGAACAGTTCAGCTGGGTTGGCCTTTTCACCTCATATTGTCACTATTGGAGTTGGGGAGGACATTGTGGCAAAGTTATTGTCGTTATCACAGCAGAGACCAAGGGCTCTGTGCATCTTGTCGGGCACCGGGACAGTTTCTTCTGTCACTCTGCGACAGCCTGCTTCTACCAATGCCAGTGTAACTTACGAGGGACGCTTCCAAATTTTATGCTTGTCTGGTTCTTACTTGGTTGCTGAAGATGGTGGATCCTCCAATAGAACTGGTGGCATTAGTGTTTCACTTTCTAGCCCTGATGGTCATGTTATTGGAGGCGCTGTTGCCATGCTTATTGCTGGAAGCCCAGTGCAGGTGGTATTGTGCAGTTTTGTGTATGGTGGCTCAAAGACCAAGTCTAAGCAAGGGACTGCTATCAAAGATGAAAGTTCTGAGCCTCCTCAGCACAGTGATAAGTTAGCTTCTTCAGCCAGTGCTCCTGCTCCACCTGGTCACAACAATCAAAACTACCTCCCTTCTGCAACAAACATTTGGCCTGGATCACGACCCACAGAGATGAAGAGTGCGCACACTCATACTGGCATTGACTTGACTCGTGGGTTATTGCCGGAACAGTATGTTTCAGAGTGGGATATTTTAGGAAAAGGAAGG 1122 0.4964 MDGREAMAFSGDSGSYYMHRGGVGVSGSGPHSGGGGFQAAPGFRALSNTGIQAESNARGPGGGGSASSFSVEPPQAHANFNHGIGIGIGTPSSDPVKKKRGRPRKYGVDGAVSLRLSPMSAPANSTQCESAITPSPKKGRGRPPGSGRKQQLAALGEWMNSSAGLAFSPHIVTIGVGEDIVAKLLSLSQQRPRALCILSGTGTVSSVTLRQPASTNASVTYEGRFQILCLSGSYLVAEDGGSSNRTGGISVSLSSPDGHVIGGAVAMLIAGSPVQVVLCSFVYGGSKTKSKQGTAIKDESSEPPQHSDKLASSASAPAPPGHNNQNYLPSATNIWPGSRPTEMKSAHTHTGIDLTRGLLPEQYVSEWDILGKGR 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr5959g00005 374 PRINTS AT-hook-like domain signature 135 146 IPR017956 GO:0003677
Mupr5959g00005 374 PRINTS AT-hook-like domain signature 97 107 IPR017956 GO:0003677
Mupr5959g00005 374 Pfam Plants and Prokaryotes Conserved (PCC) domain 169 282 IPR005175 -
Mupr5959g00005 374 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 69 324 IPR039605 GO:0003680
Mupr5959g00005 374 MobiDBLite consensus disorder prediction 287 349 - -
Mupr5959g00005 374 Gene3D - 169 298 - -
Mupr5959g00005 374 MobiDBLite consensus disorder prediction 306 345 - -
Mupr5959g00005 374 MobiDBLite consensus disorder prediction 118 133 - -
Mupr5959g00005 374 MobiDBLite consensus disorder prediction 53 105 - -
Mupr5959g00005 374 MobiDBLite consensus disorder prediction 118 150 - -
Mupr5959g00005 374 SUPERFAMILY AF0104/ALDC/Ptd012-like 166 283 - -
Mupr5959g00005 374 ProSiteProfiles PPC domain profile profile. 161 302 IPR005175 -
Mupr5959g00005 374 CDD DUF296 169 281 IPR005175 -
Mupr5959g00005 374 SMART AT_hook_2 97 109 IPR017956 GO:0003677
Mupr5959g00005 374 SMART AT_hook_2 137 149 IPR017956 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr5959g00005 Mupr-Chr5959 32275 35730 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr5959g00005 1 357 AT-hook Motif Nuclear Localized (AHL) Family AT1G63470 49.091 2.74e-100 300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr5959g00005 - - gmx:100813888 545.428