Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr5947g00001 ATGGATGCAATTAGTTGCATGGATGAAAGTACCACCACTGAATCACTCTCCATAAGTCTTTCTCCGACGACTTCTTCGAAGAAGGCTTCGACGTTGTCGAAGAAAGCTTCTCCGCCGCTGTCAAACACGCTATGCCGCGTCGGGAGCGGTGCGAGCGCGATTGTGGATTCCGACGGCGGCGGCGGAAGTACTGAGGTGGAGTCTCGGAAGCTTCCATCATCGAAGTACAAAGGCGTGGTGCCTCAACCGAACGGGCGTTGGGGCGCGCAGATTTACGAGAAGCACCAGCGTGTGTGGCTCGGAACCTTTAACGAGGAAGACGAGGCGGCGAGGGCGTACGACATCGCCGCGCAACGCTTCCGCGGCAAGGACGCCGTCACGAACTTCAAGCCTCTCGCCGGCGCTGGAGGCTCCGGCGAGGAAGACGACGACGGCGAAGCCGAGTTCCTCAACGCGCATTCCAAGTCCGAGATCGTCGACATGCTGCGTAAGCACACCTACAATGACGAGCTGGAGCAGAGTAAGCGCAGCCGCGGCGTCGTCGGCCGGCGGCGAGGCGGACCCTCCGGCGGCGGAAGCGGAACATCGATCTCCGGCGCGTGCGCTATGAAGGCGCGTGAGCAGCTCTTCGAGAAAGCCGTGACGCCGAGCGACGTCGGGAAGCTGAACCGGCTGGTGATACCGAAGCAGCACGCGGAGAAGCACTTTCCGTTGCAGAGCGTTAACGGCGTGAGCGCGACGGCGGCGAAGGGCGTTTTGTTGAACTTCGAAGACGTTGGAGGGAAAGTGTGGCGGTTTCGTTACTCGTATTGGAACAGTAGCCAGAGCTACGTGTTAACGAAGGGTTGGAGCCGGTTCGTTAAGGAAAAGAATCTCAAAGCCGGTGACACGGTTTGTTTCCACCGGTCCACCGGTCCGGACAAGCAGCTTTACATTGATTGGAAGGCGAGGAATGTTAGCGAGGTTGGGTTGTTCGGACCGGTTGGACCGGTCGTCGAGCCGATTCAGATGGTTCGGCTCTTTGGGGTTAACATTTTGAAACTACCCGGTTCGGATTCTATTGCCAATAACAATAATGCAAGTGGTTCTATTCCAGGGTGCTGCAATGGCAAGAGGAGGGAAATGGAACTGTTTTCGTTAGAGTGTAGCAAGAAACCTAAGATTATTGGCGCTTTTTTTGTGACCGATGAAAGAAAGAAGGTACAAGAACGGCGGTGTAGTGGCAAGTTGCAAAAG 1236 0.5639 MDAISCMDESTTTESLSISLSPTTSSKKASTLSKKASPPLSNTLCRVGSGASAIVDSDGGGGSTEVESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDIAAQRFRGKDAVTNFKPLAGAGGSGEEDDDGEAEFLNAHSKSEIVDMLRKHTYNDELEQSKRSRGVVGRRRGGPSGGGSGTSISGACAMKAREQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSVNGVSATAAKGVLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDTVCFHRSTGPDKQLYIDWKARNVSEVGLFGPVGPVVEPIQMVRLFGVNILKLPGSDSIANNNNASGSIPGCCNGKRREMELFSLECSKKPKIIGAFFVTDERKKVQERRCSGKLQK 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr5947g00001 412 MobiDBLite consensus disorder prediction 53 79 - -
Mupr5947g00001 412 SUPERFAMILY DNA-binding domain 74 130 IPR016177 GO:0003677
Mupr5947g00001 412 SUPERFAMILY DNA-binding pseudobarrel domain 208 312 IPR015300 -
Mupr5947g00001 412 ProSiteProfiles AP2/ERF domain profile. 75 130 IPR001471 GO:0003700|GO:0006355
Mupr5947g00001 412 Gene3D - 198 327 IPR015300 -
Mupr5947g00001 412 ProSiteProfiles B3 DNA-binding domain profile. 210 318 IPR003340 GO:0003677
Mupr5947g00001 412 MobiDBLite consensus disorder prediction 170 197 - -
Mupr5947g00001 412 CDD B3_DNA 209 303 IPR003340 GO:0003677
Mupr5947g00001 412 MobiDBLite consensus disorder prediction 1 41 - -
Mupr5947g00001 412 Pfam AP2 domain 74 122 IPR001471 GO:0003700|GO:0006355
Mupr5947g00001 412 SMART B3_2 210 318 IPR003340 GO:0003677
Mupr5947g00001 412 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 70 359 IPR044800 GO:0003700
Mupr5947g00001 412 CDD AP2 74 129 IPR001471 GO:0003700|GO:0006355
Mupr5947g00001 412 Gene3D AP2/ERF domain 74 131 IPR036955 GO:0003700|GO:0006355
Mupr5947g00001 412 FunFam AP2 domain-containing protein RAP2.8 74 131 - -
Mupr5947g00001 412 Pfam B3 DNA binding domain 210 315 IPR003340 GO:0003677
Mupr5947g00001 412 SMART rav1_2 75 136 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr5947g00001 Mupr-Chr5947 472 1747 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr5947g00001 5 392 B3 DNA Binding Superfamily AT1G25560 58.942 1.87e-146 419
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-RAV Mupr5947g00001 B3 3.4e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr5947g00001 K09287 - gmx:100801107 608.601