Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr5946g00002 ATGGGTGGAAATTCCCCTTGTGCCTCATGCAAGTTGCTGAGACGCCGGTGCACAAAAGATTGCACCTTCGCTCCTTATTTTCCTTCTGACGAACCCCAAAAGTTTGCTATAGTTCACAAGGTTTTTGGTGCCAGCAACGTTAGCAAAATGTTGCAGGAACTTCCAGTTCACCAGAGAGCAGATGCAGTGAGTAGTCTAGTGTATGAGGCAAATGCAAGAGTCAGGGACCCTGTGTATGGTTGTGTTGGAGCCATATCCTACTTACAAAATCAAGTCTCTGAGCTTCAAATGCAGCTTGCAGTTGCTCAAGCAGAGATACTCTGCATCCAGATGGAACATGAGCCAGTGATGCCAGGATCAGAAATTGATCTAGACCAGAAGTCTTACTTTCTCCAAAATGACCTCTCTCAGTTGCTTGGTTTTGACACTTCTACCAATGTAATTCATGATCCCCCCAAACATTTTTGGCCATGA 474 0.4515 MGGNSPCASCKLLRRRCTKDCTFAPYFPSDEPQKFAIVHKVFGASNVSKMLQELPVHQRADAVSSLVYEANARVRDPVYGCVGAISYLQNQVSELQMQLAVAQAEILCIQMEHEPVMPGSEIDLDQKSYFLQNDLSQLLGFDTSTNVIHDPPKHFWP 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr5946g00002 157 Coils Coil 85 105 - -
Mupr5946g00002 157 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
Mupr5946g00002 157 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
Mupr5946g00002 157 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr5946g00002 Mupr-Chr5946 21974 22890 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr5946g00002 3 131 AS2 family AT2G30130 80.451 6.35e-75 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Mupr5946g00002 LOB 6.1e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr5946g00002 - - gmx:100812780 285.804