Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mupr5938g00008 | ATGGCCTTCAGCGGGACCCAGCAGAAATGCAAGGCTTGCGATAAAACTGTTCACTTCGTCGAAAGTTTATCTGCCGATGGGGTTATTTATCATAAAAACTGCTTCAGATGCAGTCATTGCAATGGCCTTCTTGCGATAAGCAACTACTCATCCGGGGACGGAGTTTTGTACTGCAAGGCACACTATGAGCAGCTTTTCAAGGAAACTGGCACCTACCCTAGAAAATCCCAGTCGTCTGCAAAGCCTCCAAACGACCTGACTAGAACCCCAAGCAAACTCTCTGCCTTCTTCTCTGGAACTCAAGAGAAATGTTCAAAATGCAAGAAAACTGTATATCCACTTGAAAAGTTGACCGTGGAAGGTGAGTTTTACCACAAATCATGCTTTAGGTGTGCACATGGAGGGTGTTTCCTTACCCCTTCAACCTATGCTGCTCTTGATGGATTTCTTTACTGCAAGCCCCACTTCTCTCAGTTGTTCAAGGAGAAAGGTAGCTACAGTTATCTGTCCAAGCAAGCTTCAATGAAGAAACAACAACGTGAGGCTGGGGAGAAAACTGATGATGATCGCTCAGGGTCAGAGACTGAGACAGATAAAAAGGAAGCCAAGCCTGCTGAACCAGCCGAGCCAGTCGAGCCAGCCGAGCCAGCTGAGCCAGCTGAGCCAGCCGAGCCAGCTGATGATCATCCCTCTGAGCAAGAGCAGTAG | 708 | 0.4802 | MAFSGTQQKCKACDKTVHFVESLSADGVIYHKNCFRCSHCNGLLAISNYSSGDGVLYCKAHYEQLFKETGTYPRKSQSSAKPPNDLTRTPSKLSAFFSGTQEKCSKCKKTVYPLEKLTVEGEFYHKSCFRCAHGGCFLTPSTYAALDGFLYCKPHFSQLFKEKGSYSYLSKQASMKKQQREAGEKTDDDRSGSETETDKKEAKPAEPAEPVEPAEPAEPAEPAEPADDHPSEQEQ | 235 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mupr5938g00008 | 235 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 3 | 35 | - | - | |
| Mupr5938g00008 | 235 | Gene3D | Cysteine Rich Protein | 4 | 74 | - | - | |
| Mupr5938g00008 | 235 | Gene3D | Cysteine Rich Protein | 98 | 168 | - | - | |
| Mupr5938g00008 | 235 | MobiDBLite | consensus disorder prediction | 171 | 235 | - | - | |
| Mupr5938g00008 | 235 | MobiDBLite | consensus disorder prediction | 177 | 208 | - | - | |
| Mupr5938g00008 | 235 | ProSiteProfiles | LIM domain profile. | 8 | 68 | IPR001781 | - | |
| Mupr5938g00008 | 235 | SMART | lim_4 | 9 | 61 | IPR001781 | - | |
| Mupr5938g00008 | 235 | SMART | lim_4 | 103 | 155 | IPR001781 | - | |
| Mupr5938g00008 | 235 | ProSitePatterns | LIM zinc-binding domain signature. | 10 | 44 | IPR001781 | - | |
| Mupr5938g00008 | 235 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 96 | 129 | - | - | |
| Mupr5938g00008 | 235 | PANTHER | OS06G0237300 PROTEIN | 5 | 91 | - | - | |
| Mupr5938g00008 | 235 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 130 | 168 | - | - | |
| Mupr5938g00008 | 235 | ProSiteProfiles | LIM domain profile. | 102 | 162 | IPR001781 | - | |
| Mupr5938g00008 | 235 | Pfam | LIM domain | 104 | 159 | IPR001781 | - | |
| Mupr5938g00008 | 235 | Pfam | LIM domain | 10 | 65 | IPR001781 | - | |
| Mupr5938g00008 | 235 | CDD | LIM1_SF3 | 6 | 68 | - | - | |
| Mupr5938g00008 | 235 | FunFam | LIM domain and actin-binding 1 | 4 | 74 | - | - | |
| Mupr5938g00008 | 235 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 36 | 73 | - | - | |
| Mupr5938g00008 | 235 | FunFam | LIM domain and actin-binding 1 | 98 | 168 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mupr5938g00008 | Mupr-Chr5938 | 57019 | 58291 | Dispersed |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | LIM | Mupr5938g00008 | LIM | 3.9e-11 | CL0167 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mupr5938g00008 | - | K24413 | gmx:100499865 | 369.392 |