Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr5938g00006 ATGGGAGTAGGAACTAGCACCTTTGTTACTAGATGGATCAACTTTCTCACCATGCTTTTGGCTATTGCTGTGATAATATTTGGAGTGTGGATGAGCACTCATCATGATGGCTGCCGAAAGTCTCTCACTCTGCCTGTGATAGGCCTTGGAGCAATCTGTAGTTGGCTATTTGGGTGCCCTGAAAAACATCTCCATACTATTATGGTATCTGATTGCGCTGTTCTTTGTCTTGGTGGGAATCCTGGTCTTTACAGTATTGGTGTAATTCTTGACATGAAGCTTTCTTGTCTGCTCAGGTATAAGGAGTATCAACTTCAAGATTTTAGTTCTTGGTTTCTCAAAGAGTTAAACAATTCTCATAACTGGGAGAAATTGAAGGTTTGTCTTGTCAAATCTGAAGACTGCAATTACCTATCCAAAAAATATAAGACTCTTAAACAATATAAATCAGCAAAATTGACACCAATTGAAGCTGGCTGCTGCCGACCACCTTCCCAATGTGGATATCCTGCTGTAAATGCATCCTACTATGACTTGACCTTTCATCCAGTTAGTCCCAACAATGACTGCAAGCGCTACAAAAATTCTCGGGCCATCAAATGCTATGATTGTGATTCTTGCAAGGCTGGCGTGGCACAATACATGAAAATCGAATGGAGAGTTGTTGCAATATTTAATGTTGTTTTATTTGTTTTCTTGAGGGAGGCGGTGTGCAAATGGAAGTGGGTGGCGCTCCGAAACATGGGCGGCGGTCCTCGCACCTTTCCGGGCGGCGTGAACAAGTGGAAATGGAAGCGCATGCACGAGAAACTCGCTAGAGACAAACAAAAGAGACTCATAGAACAAGAGAAGCAGCTCTACGAGGCTCGAATTCGGTCCCACATCCGCTCCACCCTCTCCCCCGACCACCGCTCCGCCGCCGCCGCCTCTCACAGCCCCCTCTCCCCTCACGACCAAATCAAAGCCCTCGCCGATCGCTTCGTCAAAGACGGCGCTCAAGATCTCTGGAACAATCGCGACGGTCCCCTCACCCCAACACCAACACCAACATCATCACCAACTCCGAACCTCAATTTCTGCCCCAAACACACAAGGGGTTACCGTTCTGTTCCCGAGGTTAGAAACAATCGTGTTGGGGCCCACAAGTATAGGGTTTGGCGGAAGGGTAGTGATGATTCTTCCAGTGAGAGCGAGAGCGAGGGTGAAATTGAGTTGAGTTCCAAGATGGGTAGTAGTGCTTCTTTGGGGGAATATGATGTTAAGAGAGAGAGGAGGGTGGTGCCCAAGTTATCGGAAGAGGTTGAGTTTATCAGGTATGAGCTTAATAAGAGGAAGTTGAGCCAGATTGAGGAACATGAGAGTGAGGAACAACACACCATCCTAAGCACCACAAGATTTGACGAGTGCAGTATATCGCCACTGACTATCAAAGCACTTTCTTCGGCTGGTTATGTTCATATGACCCGGGTACAAGAGGCTAGCCTCCCTATTTGCCTTGAGGGTATGGATGCTTTAGTCAAAGCTAAAACTGGCACTGGAAAAAGTGTAGCTTTTTTGCTTCCTGCTATTGAAACAGTTCTAAAAGCTACCAGTGGCAATAGGGTGCCTCCAATATTTGTTCTTATTCTCTGTCCTACCAGAGAACTTGCTAGTCAAGTTGCTGCTGTAGCAAAGGTTTTGCTGAAATATCATGACGGCATTGGGGTGCAGACTCTTGTTGGAGGCATACGATTTAAAGTCGACCAAAAACGCCTTGAATCAGATCCATGCCAGATACTTGTCGCTACACCTGGTAGGTTGCTGGATCATATTGAGAATAAGTCTGGAATATCTCTGCGACTAATGGGTTTACGGATGCTTGTACTTGATGAAGCGGATCATTTACTGGACCTGGGATTTAGAAAGGATGTGGAAAAAATTGTTGATTGTTTGCCCCGTCAAAGGCAATCTTTGCTGTTTTCTGCAACCATACCAAAGGAGGTCCGACGAATATCTCAGCTTGTTTTGAAAAGGGAACACAAATATGTTGATACAGTTGGAATTGGTTGTATAGAAACTCCCGTAAAGCAATCTTATCTTATTGCTCCTCACGAGTCACATTTACAATTAGTGCACCATGTTCTGAAGGAGCATATCTTGCAAACACCTGATTATAAGGTTATTGTATTCTGTATAACTGGGATGGTGACATCACTCATGTATAACCTTCTTCGGGAAATGAAAATGAACGTAAGGGAGATACATTCTCGAAAACCTCAGCTCTATCGAACTCGTATATCAGATGAGTTCAGGGAATCCAAACAATTGATTCTTGTCTCATCTGATGTTTCATCGCGGGGAATGAATTATCCTGATGTTACCTTAGTCATACAGGTGGGAATTCCTTCTGACCGTGAACAATACATACATCGTCTTGGAAGAACAGGTCGGGAAGGCAAAGAAGGAGAAGGCATATTGTTGATTGCACCATGGGAAGAGTATTTTTTACATGAAATCAAGGATCTACCGCTACAGAAATTCCCCTTACCAGATATAGATCCACAGACAAAGCTTAAGATTGAGAATTCAATGGCAAAGATAGATAATGACATAAAAGAAGCAGCTTTTCATGGTTGGCTTGGTTATTATAACTCCATCAGGGAAATTGGGAGGGAAAAGACCACTGTAGCTGAGCTGGCAAACCGATTTTCTGAATCAATTGGTTTACAGAGGCCTCCTGCTATCTTCCGAAAAACTGCAATAAAAATGGGTTTGAAGGACATTCCTGGCATTAGAATTCGTAGATAG 2787 0.4403 MGVGTSTFVTRWINFLTMLLAIAVIIFGVWMSTHHDGCRKSLTLPVIGLGAICSWLFGCPEKHLHTIMVSDCAVLCLGGNPGLYSIGVILDMKLSCLLRYKEYQLQDFSSWFLKELNNSHNWEKLKVCLVKSEDCNYLSKKYKTLKQYKSAKLTPIEAGCCRPPSQCGYPAVNASYYDLTFHPVSPNNDCKRYKNSRAIKCYDCDSCKAGVAQYMKIEWRVVAIFNVVLFVFLREAVCKWKWVALRNMGGGPRTFPGGVNKWKWKRMHEKLARDKQKRLIEQEKQLYEARIRSHIRSTLSPDHRSAAAASHSPLSPHDQIKALADRFVKDGAQDLWNNRDGPLTPTPTPTSSPTPNLNFCPKHTRGYRSVPEVRNNRVGAHKYRVWRKGSDDSSSESESEGEIELSSKMGSSASLGEYDVKRERRVVPKLSEEVEFIRYELNKRKLSQIEEHESEEQHTILSTTRFDECSISPLTIKALSSAGYVHMTRVQEASLPICLEGMDALVKAKTGTGKSVAFLLPAIETVLKATSGNRVPPIFVLILCPTRELASQVAAVAKVLLKYHDGIGVQTLVGGIRFKVDQKRLESDPCQILVATPGRLLDHIENKSGISLRLMGLRMLVLDEADHLLDLGFRKDVEKIVDCLPRQRQSLLFSATIPKEVRRISQLVLKREHKYVDTVGIGCIETPVKQSYLIAPHESHLQLVHHVLKEHILQTPDYKVIVFCITGMVTSLMYNLLREMKMNVREIHSRKPQLYRTRISDEFRESKQLILVSSDVSSRGMNYPDVTLVIQVGIPSDREQYIHRLGRTGREGKEGEGILLIAPWEEYFLHEIKDLPLQKFPLPDIDPQTKLKIENSMAKIDNDIKEAAFHGWLGYYNSIREIGREKTTVAELANRFSESIGLQRPPAIFRKTAIKMGLKDIPGIRIRR 928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr5938g00006 928 MobiDBLite consensus disorder prediction 334 372 - -
Mupr5938g00006 928 Pfam Helicase conserved C-terminal domain 707 811 IPR001650 -
Mupr5938g00006 928 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 707 857 IPR001650 -
Mupr5938g00006 928 PANTHER RNA HELICASE 424 857 - -
Mupr5938g00006 928 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 495 675 IPR014001 -
Mupr5938g00006 928 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 464 492 IPR014014 GO:0003724
Mupr5938g00006 928 CDD DEADc_MSS116 471 677 - -
Mupr5938g00006 928 MobiDBLite consensus disorder prediction 387 410 - -
Mupr5938g00006 928 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 538 831 IPR027417 -
Mupr5938g00006 928 CDD SF2_C_DEAD 688 821 - -
Mupr5938g00006 928 Pfam DEAD/DEAH box helicase 488 663 IPR011545 GO:0003676|GO:0005524
Mupr5938g00006 928 Gene3D - 685 910 IPR027417 -
Mupr5938g00006 928 Gene3D - 441 677 IPR027417 -
Mupr5938g00006 928 SMART ultradead3 483 691 IPR014001 -
Mupr5938g00006 928 SMART helicmild6 731 812 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr5938g00006 Mupr-Chr5938 32157 40781 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr5938g00006 466 833 Eukaryotic Initiation Factors Gene Family AT1G72730 29.301 7.36e-41 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr5938g00006 - - gmx:100808520 1187.56