Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr5908g00003 ATGGGCGTGAACATGTCCAACAAACTACCTCACACCAAAGACTTGTCCTCTCCAGCTCTCTCTCTTAGCCTGGCTGGGATTTTCCGGCATGCTGAGGAGGCGGCGGCGGAGACTTCCGGCATGGAGGTGGTCGGCGATGAGGTCCGGCGAGAGGACACCGTTGAGTTTAGCAGCGATAACTCCGGACCCATGAGATCCAGGTCCGAGGATAATTTTGATGGAGAAGGTACTCATGAGAATGACGACAACAACAATGAAAACAACCCAGAGAAAAAGAAGAGGAAGTATCACAGGCACACCGCTGAACAGATAAGAGAAATGGAAGCGTACGAATCACCGCATCCTGATGAAAAGCAGAGGCTACAACTCAGCAAGCAACTTGGCCTTGCTCCAAGGCAAGTCAAATTTTGGTTCCAAAATCGTCGAACGCAAATCAAGGCAATACAAGAGCGCCATGAAAATTCATTGTTCAAGACAGAATTAGAGAAACTAAGGGAGGAAAATAAGGCCATGAGGGAGACCATAAACAAATCTTGTTGCCCCAATTGTGGCACGGTAACGGCCATAGATGGTTCCATTTCCACCGAAGAGAAACAACTTCGTATCGAAAATGCTAAACTCAAAGCTGAGGTAAAGAAGCTTCGAACAGCTTTAGGGAAATGCTCGCCAAGGACAACGTCCCCTTCATCTTCTGCTGGCCATGACGAGGAAGAGAGTAGAAGCTCTTTGGCTTTTTACAATGGTATTTTTGGGCTCGAGAAATCAAGGATAACGGATATAGTAAACCGAGCAACGGAGGAGTTCATAAAGATGGCAAATATGGGGGAACCGTTATGGGTTCGTAGCGTTGAGACGGGTCGCGAAATACTTAACTACGATGAATATGTGAAGGAGTTCGCAGTTGAAAATTCGTGTACTGAAAGGCCAAAGACATTCATCGAAGTCTCCAGAGAGACTGGCCTTGTTTTTATGGATCTGCCACGGCTTGTCCAAAGTTTTCTTGATGTGAATCAATGGAAGGAAATGTTTCCGTGCTTAATATCAAAGGCAGCGACTGTTGATGTTGTATGCAACCGAGAAGGTTCTAACGGGAATGGTGCAGTGCAATTGATGTTTGCTGAGCTTCAAATGCTCACTCCATTGGTGCCCACCAGAGAAGTGTATTTTGTGAGGTGCTGCAAAAAGTTGAGTGATGAACAGTGGGCAATAGTTGATGTATCCATAGACAAAGTAGAAGACAACATTGATGCATCCCTTGTGAAGTGCAGAAAACGCCCATCTGGTTGTATTATCGAGGATAAGTCAAATGGCCATTGCAAGGTGATATGGGTGGAGCACTTGGAGTGCCAAAAGAGCACAATTCACACATTGTTTCGAGCCTTTGTCAACAGTGGTCTAGCTTTTGGGGCAAGGCATTGGATAGAAACACTACAACTTCAATGCGAACGTCTGGTTTTTAACATGGCAACGAATGTTCCCACGAAGGATTCAACTGGTGTTGCCTCGTTGGCTGGGAGGAAAAGCATTTTGAAGTTGGCACAGAGAATGACATGGAGTTTCTGCCATGCAGTTGGTGCATCGAGTTTCCATACATGGACCAAGATCACAGGTAAAACAGGAGAAGACATAAGGATTAGCTCTAGGAAGAACTTGAATGACCCTGGTGAACCTCTTGGCGTTATCTTGTCAGCCGTTTCTTCTGTCTGGCTTCCTGTCTCTCCTAATGTGCTGTTTGATTTCTTGAGAGATGAAGCTCGTCGAAGTGAGTGGGATATCATGTCCAGTGGTGGGTCAGTGCAGTCCATTACAAATTTAGCTAAAGGAAAAGATCGAGGCAATGTTGTAAACATCCAAAAAATGCAATCAAAAGATAACAGTGTGTGGATATTGCAAGATAGCTGCACAAGTGCTTATGAGTCAATGGTGGTATATGCTCCTGTGGAATTTGCTGGCATTCAATCTGTGATGTCAGGATGTGATTCAAGTAATGTTGCAGTATTGCCGTCAGGATTCTCAATTCTTCCTGATGGGATTGAAACAAGGCCATTGGTGATTACGTCAAGGCAAGAAGAAAAAGGCACAGATCAAGGAGGGTCTTTATTTACAATGGCATTTCAGATCATTGCCAATGCTTCCCCAGCCAAGTTAACAATGGAGTCCGTGGAACCGGTTAATAATCTTGTGTCTTGTACATTAAGAAATATTAGAACAAGTTTACAGTGTGAAGATGGTTAG 2235 0.447 MGVNMSNKLPHTKDLSSPALSLSLAGIFRHAEEAAAETSGMEVVGDEVRREDTVEFSSDNSGPMRSRSEDNFDGEGTHENDDNNNENNPEKKKRKYHRHTAEQIREMEAYESPHPDEKQRLQLSKQLGLAPRQVKFWFQNRRTQIKAIQERHENSLFKTELEKLREENKAMRETINKSCCPNCGTVTAIDGSISTEEKQLRIENAKLKAEVKKLRTALGKCSPRTTSPSSSAGHDEEESRSSLAFYNGIFGLEKSRITDIVNRATEEFIKMANMGEPLWVRSVETGREILNYDEYVKEFAVENSCTERPKTFIEVSRETGLVFMDLPRLVQSFLDVNQWKEMFPCLISKAATVDVVCNREGSNGNGAVQLMFAELQMLTPLVPTREVYFVRCCKKLSDEQWAIVDVSIDKVEDNIDASLVKCRKRPSGCIIEDKSNGHCKVIWVEHLECQKSTIHTLFRAFVNSGLAFGARHWIETLQLQCERLVFNMATNVPTKDSTGVASLAGRKSILKLAQRMTWSFCHAVGASSFHTWTKITGKTGEDIRISSRKNLNDPGEPLGVILSAVSSVWLPVSPNVLFDFLRDEARRSEWDIMSSGGSVQSITNLAKGKDRGNVVNIQKMQSKDNSVWILQDSCTSAYESMVVYAPVEFAGIQSVMSGCDSSNVAVLPSGFSILPDGIETRPLVITSRQEEKGTDQGGSLFTMAFQIIANASPAKLTMESVEPVNNLVSCTLRNIRTSLQCEDG 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr5908g00003 744 MobiDBLite consensus disorder prediction 218 239 - -
Mupr5908g00003 744 SUPERFAMILY Homeodomain-like 78 149 IPR009057 -
Mupr5908g00003 744 Pfam START domain 261 483 IPR002913 GO:0008289
Mupr5908g00003 744 ProSiteProfiles 'Homeobox' domain profile. 87 148 IPR001356 GO:0003677
Mupr5908g00003 744 SUPERFAMILY Bet v1-like 252 483 - -
Mupr5908g00003 744 Coils Coil 147 174 - -
Mupr5908g00003 744 CDD START_ArGLABRA2_like 254 482 - -
Mupr5908g00003 744 FunFam Homeobox-leucine zipper protein GLABRA 2 259 482 - -
Mupr5908g00003 744 ProSitePatterns 'Homeobox' domain signature. 123 146 IPR017970 GO:0000981|GO:0006355
Mupr5908g00003 744 Gene3D - 77 161 - -
Mupr5908g00003 744 SUPERFAMILY Bet v1-like 505 676 - -
Mupr5908g00003 744 ProSiteProfiles START domain profile. 250 486 IPR002913 GO:0008289
Mupr5908g00003 744 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 90 739 IPR042160 -
Mupr5908g00003 744 FunFam Homeobox-leucine zipper protein HDG1 78 164 - -
Mupr5908g00003 744 Pfam Homeodomain 93 146 IPR001356 GO:0003677
Mupr5908g00003 744 SMART START_1 259 483 IPR002913 GO:0008289
Mupr5908g00003 744 CDD homeodomain 93 146 IPR001356 GO:0003677
Mupr5908g00003 744 Coils Coil 197 217 - -
Mupr5908g00003 744 SMART HOX_1 92 152 IPR001356 GO:0003677
Mupr5908g00003 744 MobiDBLite consensus disorder prediction 35 100 - -
Mupr5908g00003 744 Gene3D - 316 481 IPR023393 -
Mupr5908g00003 744 MobiDBLite consensus disorder prediction 66 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr5908g00003 Mupr-Chr5908 17584 22417 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr5908g00003 56 743 Homeobox Transcription Factor Family AT1G79840 63.300 0.0 882
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Mupr5908g00003 START 1.6e-55 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr5908g00003 K09338 - gmx:100806193 1269.99